Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium299g00002 ATGGTTGGCGGTGGAAATGGAGAGGGAGCTCCACCCTCGACGGCGGCAGAGAGCGTTTTCAACGGCGGGGACACTGCGGGGTATAGCCCCGGTCCCATGACTCTGCTTTCTAGCCTGTTCGGTGACGGCGATGAGTATAAGTCGTTCTCGGAGTTCCTCGCCGGCGCTATGATGGACCCCACCCCTCCTTGGTTCTTTTACGATTCACCTTCTCAAGGACACTTTGGAATGACACAGCAGCAAATGCTAGCACAGGTCACATCCCACTCCAATGTGCAAATTCAAGCTGAAGATCCATTCTCTGCAGCAGTTCCTGCTACCTCATTGACACAGGTTTCTACAACTATTTCCACCACTGCACAGCACCTGATAACACAACCAAATGATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACATGTAAAAGGTAGTGACTTCTCTCGAAGTTATTACAAATGCACACATCCAAATTGTCCTGTTAAGAAAAAGCTTGAGCGATCTCTTGAGGGTCATGTAACTGCAATTATCTACAAAGGAGAGCACAACCATCAACGTAAGACGACAAAAGGCACCCTAACATCAACTGAGAATTCAGATAAGTTGAAAGAAGAGAGGAGTTCTCACTCGGTGTCTCAGATGGATCTAGAATCTGGAACGAGTGACAGTGAGGAAGTAGGTGATCATGAAACTGAAATGGATGAGAAAAATGATGAACCTGATCCAAAGAGGAGAAACACAGAAGGCAGACTCCAGGATCCAGCCTCTTTGCATAGAACTGTGGCAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGGATCTCTTGGATGATGGATATAGGTGGCGCAAATATGGGCAGAAAGTTGTCAAGGGCAACCCCTATCCAAGGTTGCAATGTTCGGAAGCATGTTGA 918 0.4728 MVGGGNGEGAPPSTAAESVFNGGDTAGYSPGPMTLLSSLFGDGDEYKSFSEFLAGAMMDPTPPWFFYDSPSQGHFGMTQQQMLAQVTSHSNVQIQAEDPFSAAVPATSLTQVSTTISTTAQHLITQPNDDGYNWRKYGQKHVKGSDFSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQRKTTKGTLTSTENSDKLKEERSSHSVSQMDLESGTSDSEEVGDHETEMDEKNDEPDPKRRNTEGRLQDPASLHRTVAEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRLQCSEAC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium299g00002 305 FunFam WRKY transcription factor 117 188 - -
Vium299g00002 305 MobiDBLite consensus disorder prediction 197 211 - -
Vium299g00002 305 SMART WRKY_cls 128 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00002 305 SMART WRKY_cls 277 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00002 305 MobiDBLite consensus disorder prediction 176 258 - -
Vium299g00002 305 SUPERFAMILY WRKY DNA-binding domain 269 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium299g00002 305 MobiDBLite consensus disorder prediction 236 252 - -
Vium299g00002 305 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 298 IPR044810 GO:0003700
Vium299g00002 305 SUPERFAMILY WRKY DNA-binding domain 126 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium299g00002 305 ProSiteProfiles WRKY domain profile. 272 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00002 305 Gene3D WRKY domain 264 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium299g00002 305 MobiDBLite consensus disorder prediction 1 23 - -
Vium299g00002 305 Pfam WRKY DNA -binding domain 129 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00002 305 Pfam WRKY DNA -binding domain 278 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00002 305 ProSiteProfiles WRKY domain profile. 128 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00002 305 Gene3D WRKY domain 112 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium299g00002 Vium-Chr299 4559 6911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium299g00002 11 298 WRKY Transcription Factor Family AT2G03340 44.660 4.77e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium299g00002 WRKY 7.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium299g00002 - - vra:106767403 528.865