Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium299g00001 ATGGTTGGCGGTGGAAATGGAGAGGGAGCTCCACCCTCGACGGCGGCAGAGAGCGTTTTCAACGGCGGGGACACTGCGGGGTATAGCCCCGGTCCCATGACTCTGCTTTCTAGCCTGTTCGGTGACGGCGATGAGTATAAGTCGTTCTCGGAGTTCCTCGCCGGCGCTATGATGGACCCCACCCCTCCTTGGTTCTTTTACGATTCACCTTCTCAAGGACACTTTGGAATGACACAGCAGCAAATGCTAGCACAGGTCACATCCCACTCCAATGTGCAAATTCAAGCTGAAGATCCATTCTCTGCAGCAGTTCCTGCTACCTCATTGACACAGGTTTCTACAACTATTTCCACCACTGCACAGCACCTGATAACACAACCAAATGATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACATGTAAAAGGTAGTGACTTCTCTCGAAGTTATTACAAATGCACACATCCAAATTGTCCTGTTAAGAAAAAGCTTGAGCGATCTCTTGAGGGTCATGTAACTGCAATTATCTACAAAGGAGAGCACAACCATCAACGTAAGACGACAAAAGGCACCCTAACATCAACTGAGAATTCAGATAAGTTGAAAGAAGAGAGGAGTTCTCACTCGGTGTCTCAGATGGATCTAGAATCTGGAACGAGTGACAGTGAGGAAGTAGGTGATCATGAAACTGAAATGGATGAGAAAAATGATGAACCTGATCCAAAGAGGAGAAACACAGAAGGCAGACTCCAGGATCCAGCCTCTTTGCATAGAACTGTGGCAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGGATCTCTTGGATGATGGATATAGGTGGCGCAAATATGGGCAGAAAGTTGTCAAGGGCAACCCCTATCCAAGGAGCTATTACAAGTGCACCACCCCAGGTTGCAATGTTCGGAAGCATGTTGAGAGGGCTTCGACGGATCCTAAAGCTGTAATAACAACATATGAAGGAAAACATAATCATGATGTACCAGCAGCTAAGACTAATAGTCACACACTTGCCAATAATAGTTCAACACAGCTGAAAGCACAAAATGCCATGCCTGATGAGAATATGCATGGTTTCAGGGGCAGTGAACAGCGACCTGTGGCAAGTCTAAGACTAAAGGAAGAGAAGATAACTTAG 1164 0.4639 MVGGGNGEGAPPSTAAESVFNGGDTAGYSPGPMTLLSSLFGDGDEYKSFSEFLAGAMMDPTPPWFFYDSPSQGHFGMTQQQMLAQVTSHSNVQIQAEDPFSAAVPATSLTQVSTTISTTAQHLITQPNDDGYNWRKYGQKHVKGSDFSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQRKTTKGTLTSTENSDKLKEERSSHSVSQMDLESGTSDSEEVGDHETEMDEKNDEPDPKRRNTEGRLQDPASLHRTVAEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTLANNSSTQLKAQNAMPDENMHGFRGSEQRPVASLRLKEEKIT 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium299g00001 387 SMART WRKY_cls 128 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00001 387 SMART WRKY_cls 277 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00001 387 FunFam WRKY transcription factor 33 264 330 - -
Vium299g00001 387 Pfam WRKY DNA -binding domain 278 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00001 387 Pfam WRKY DNA -binding domain 129 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00001 387 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 357 IPR044810 GO:0003700
Vium299g00001 387 MobiDBLite consensus disorder prediction 362 387 - -
Vium299g00001 387 MobiDBLite consensus disorder prediction 197 211 - -
Vium299g00001 387 SUPERFAMILY WRKY DNA-binding domain 269 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium299g00001 387 MobiDBLite consensus disorder prediction 176 258 - -
Vium299g00001 387 FunFam WRKY transcription factor 117 188 - -
Vium299g00001 387 ProSiteProfiles WRKY domain profile. 272 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium299g00001 387 MobiDBLite consensus disorder prediction 236 252 - -
Vium299g00001 387 SUPERFAMILY WRKY DNA-binding domain 126 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium299g00001 387 Gene3D WRKY domain 112 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium299g00001 387 Gene3D WRKY domain 262 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium299g00001 387 MobiDBLite consensus disorder prediction 1 23 - -
Vium299g00001 387 ProSiteProfiles WRKY domain profile. 128 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium299g00001 Vium-Chr299 4354 6911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium299g00001 11 387 WRKY Transcription Factor Family AT2G03340 47.705 1.15e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium299g00001 WRKY 8.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium299g00001 - - vra:106767403 697.582