Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2999g00003 ATGGACTTGAATGAGTTTTCAAGTGTCGGTGTGACTAGTTCGGCAGGAACTCCTTGCACATCATCTTATATTCCTATTTCAGCAATACCCAACAGGTTGCTTGGATCCTTGAAACACGACATAGAACACTCTCCTAATTCGGCCCTTTCTACCCATTTTGATTCTGATACCCTTTCTTCTGCGCTAAGTGACAGCCAGGAACAGCACACCGCTGGGGAAATTCACTCTGGTGTAAACCCTTTGCAGGAAACCAATCATTATTTGTATAGGCCAGTCTCATCTGTGGACCATCTCCAAGACGGTAAGCATCTATCTACTAGATGCTTTTTTCCACAGGATATAGGTTATGATCATGAAACCAGGTATGCATTGCTGGAATTAGAAACTGCTTTGATGGCACCTGATGGTGATGATCAAGTCACCACATCAAGCACTTCTTTGGGTGTTAACAGAAGGCCTACAACATCTGCCCAGAGAAATAGATCCTGGAGCCATGAGGGGCAGCCAAGTGATGTTGCACGAGTAGGTAAGCGTCACAAATCAACTGAGGAAGTATCACTACAAGGATTCCCATCAACCAATTTGAAAGAATTGCTGATTGTATCAGCCAAAGCCTTGTCTGAAAACAACATGAAAGATTTTGATCGACTGATAGAGAAGGCTAGAAGTGTTGTGTCTATAACTGGGGAGCCAATCCAGCGCCTTGGTGCTTATTTGGTGGAAGGACTTGTTGCAAGGAAGGGGGCATCAGGGAATAACATCTACCGTGCACTTAGATGCAGAGAACCTGAAGGAAAAGACTTGCTCTCTTACATTCAGCTACTGTATGAAATATGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGCGCCATTGCTGAAGCTTGTAGAGATGAGGACCACATTCATATCATAGACTTTCAGATTGGTCAGGGAATTCAATGGATGACACTTCTTCAAGCTCTTGCTGCAAGACCTGGTGGAGCTCCTCATGTACGGATCACAGGGATTGATGACCCCCTTTCTAAATATGTTCGTGGTGATGGATTAGAAGCCGTTGGAAAAAGGTTGGCTGAAATATCTCAGACATTTAACATCCCAGTAGAGTTCCACAGTGTGCCTGTTTTAGCTCCATATGTGACAAAAGACATGCTTGACATTAGGCCTGGTGAAGCTTTGGCTGTGAATTTCCCTTTGCAACTCCATCACACGGCTGATGAGAGTGTGAATATGAATAATCCAAGGGATGGACTTTTGAGATTGGTAAAATCACTTTCTCCCAAGGTAACTACGTTGATTGAGCAAGAGTCGAACACTAATACCACTCCTTTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTGGCAATTTTTGAGTCCATTGATGTGTCTCTTGCAAGAAAGAGCAAGGATCGGATTAATGTGGAACAACATTGTCTGGCACGGGATATTGTCAATATTGTTGCTTGTGAAGGGAAGGAAAGGGTAGAGAGACATGAACTATTAGGTAAGTGGAAGTCTAGGTTCACAATGGCTGGATTTTCTCAATATCCTTTGAGTTCATACGTTAATTCTGTCATAAGGAGCCTGCTTAGGTGCTATTCAGAACATTATAATCTTGTGGAGAAGGATGGGGCCATGTTGTTGGGATGGAAGGACAGAAATTTGATTTCAGCTTCAGCATGGCATTGA 1698 0.4305 MDLNEFSSVGVTSSAGTPCTSSYIPISAIPNRLLGSLKHDIEHSPNSALSTHFDSDTLSSALSDSQEQHTAGEIHSGVNPLQETNHYLYRPVSSVDHLQDGKHLSTRCFFPQDIGYDHETRYALLELETALMAPDGDDQVTTSSTSLGVNRRPTTSAQRNRSWSHEGQPSDVARVGKRHKSTEEVSLQGFPSTNLKELLIVSAKALSENNMKDFDRLIEKARSVVSITGEPIQRLGAYLVEGLVARKGASGNNIYRALRCREPEGKDLLSYIQLLYEICPYLKFGYMAANGAIAEACRDEDHIHIIDFQIGQGIQWMTLLQALAARPGGAPHVRITGIDDPLSKYVRGDGLEAVGKRLAEISQTFNIPVEFHSVPVLAPYVTKDMLDIRPGEALAVNFPLQLHHTADESVNMNNPRDGLLRLVKSLSPKVTTLIEQESNTNTTPFFNRFIETLDYYLAIFESIDVSLARKSKDRINVEQHCLARDIVNIVACEGKERVERHELLGKWKSRFTMAGFSQYPLSSYVNSVIRSLLRCYSEHYNLVEKDGAMLLGWKDRNLISASAWH 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2999g00003 565 MobiDBLite consensus disorder prediction 135 178 - -
Vium2999g00003 565 ProSiteProfiles GRAS family profile. 186 565 IPR005202 -
Vium2999g00003 565 Pfam GRAS domain family 195 564 IPR005202 -
Vium2999g00003 565 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 156 561 IPR005202 -
Vium2999g00003 565 MobiDBLite consensus disorder prediction 58 79 - -
Vium2999g00003 565 MobiDBLite consensus disorder prediction 136 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2999g00003 Vium-Chr2999 25310 28776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2999g00003 118 564 GRAS Transcription Factor Family AT5G48150 56.027 9.27e-176 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2999g00003 GRAS 1.2e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2999g00003 - - gmx:100775665 982.63