Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2998g00001 ATGGAACGTTTTCACTCTCTTAGTACTCTGTCTTCTGCAATTGAAATGGCTTCATCACCAGAGACAGAGCATCCCAACAAGGCATTTGGATGGGCAGCCAGGGACATTTCTGGTATTCTCTCCCCTTTCAACTTCTCCAGAAGGGCAACAGGAGAGAAAGATGTTGCAATTAAAGTAATGTACTGTGGAATATGTCACTCAGACTTACATATGTTAAAGAATGAGTGGAACTGTTCAATCTATCCTATTGTTCCTGGACACGAGGTTGCTGGTGTGGTGACAGAAGTGGGAAGCAAGGTGAAAAAGTTCAAAGTTGGAGACAGAGTTGGTGTAGGGGGCATGGCTGGATCCTGTAAATCCTGTCAGAATTGTAGTGAAGATCTCGAGAATTATTGTCCCAAAATGATTTTCACATACAGTGGCAAGCATGTTGATGGCACCATAACATACGGAGGCTACTCTGACTCGATGGTTGTAGATGAACACTTCGTGGTTCGAATTCCAGATAACCTACCTCTTGATGCTGCTGCACCTCTCCTTTGTGCTGGAATCACAGTGTATAGCCCTTTGAAATATTATGGACTTGACAAGCCTGGACTTCATATTGCTGTGGTTGGTCTTGGTGGAATCGGTCACATGGCTGTCAAGTTTGCCAAAGCTCTTGGGCTTAAGGTTACAGTGATCAGTACATCTCCCAGTAAAGAGAGGGAAGCAATTGAACATATGGGAGCTGACTCATTTGTTGTTAGTCATAAACTAGATGAGATGATGGCTGTAATGGGAACCTTTGATGGAATCATTGACACAGTTTCTGCTAATCATTCTCTCGTGCCTTTGATTGGCCTGTTGAAGACTAATGGTAAACTAGTCATGATTGGTTCACCGGAGAAGCCTCTGGAGGTTCCAGCATTTGCCTTACTTACGGGAAGGAAGCTGGTTGGTGGCAGTGCAATTGGAGGGATGAAAGAGACGCAAGAAATGATCGACTTTGCTGCGAAACATGATGTGAAACCTGATATCGAAGTTATTGAAATGGATTATGTGAACACTGCGATGGAACGCCTCCTCAAATCAGATGTGAAGTATCGATTTGTTATTGATATTGGAAACACGTTGAAGCCAAGTTCCTGA 1131 0.4359 MERFHSLSTLSSAIEMASSPETEHPNKAFGWAARDISGILSPFNFSRRATGEKDVAIKVMYCGICHSDLHMLKNEWNCSIYPIVPGHEVAGVVTEVGSKVKKFKVGDRVGVGGMAGSCKSCQNCSEDLENYCPKMIFTYSGKHVDGTITYGGYSDSMVVDEHFVVRIPDNLPLDAAAPLLCAGITVYSPLKYYGLDKPGLHIAVVGLGGIGHMAVKFAKALGLKVTVISTSPSKEREAIEHMGADSFVVSHKLDEMMAVMGTFDGIIDTVSANHSLVPLIGLLKTNGKLVMIGSPEKPLEVPAFALLTGRKLVGGSAIGGMKETQEMIDFAAKHDVKPDIEVIEMDYVNTAMERLLKSDVKYRFVIDIGNTLKPSS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2998g00001 376 Pfam Zinc-binding dehydrogenase 209 332 IPR013149 -
Vium2998g00001 376 FunFam Uncharacterized protein 31 181 - -
Vium2998g00001 376 PANTHER ALDEHYDE REDUCTASE 20 371 IPR047109 GO:0016616
Vium2998g00001 376 SUPERFAMILY GroES-like 38 199 IPR011032 -
Vium2998g00001 376 FunFam Putative cinnamyl alcohol dehydrogenase 6 339 368 - -
Vium2998g00001 376 FunFam Cinnamyl alcohol dehydrogenase 182 338 - -
Vium2998g00001 376 Gene3D - 182 338 - -
Vium2998g00001 376 SMART PKS_ER_names_mod 38 366 IPR020843 GO:0016491
Vium2998g00001 376 Pfam Alcohol dehydrogenase GroES-like domain 53 166 IPR013154 -
Vium2998g00001 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 171 337 IPR036291 -
Vium2998g00001 376 CDD CAD1 29 367 IPR047109 GO:0016616
Vium2998g00001 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 86 100 IPR002328 GO:0008270|GO:0016491
Vium2998g00001 376 Gene3D - 31 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2998g00001 Vium-Chr2998 986 4517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2998g00001 27 375 Monolignol Biosynthesis Gene Families AT4G37990 69.054 2.21e-167 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2998g00001 K23232 - qsa:O6P43_025194 589.726