Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2991g00012 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTGCTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCTACTGGGTTGAATGAGTTACTTCCTAGTGCTTGGAGCTTTGACTCTTTTGATGAGAACCAGGGTTTAGCAACTTTGAATCCTTCATTTGCTGCATTTTCAACCCCACTAGACCACAGGTTTGAATGTCCTTATGGAAGTGAAGCAACCCACCCTTTTGTTGATGAGTTCTCATTGCCTGAGCTTGAATCATTATACACCAGAAATGATGAGTCAGCACCAGTTCTCCCACAAGAAGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGTGATAACCAGAGTTTGGAGCAAGCAAAAAATGGCTGCAAAATTGAGGAACAATTGACAGAGATTCCAGTCTTCAACATGGGTTTGTGTGCAGAGAAAAAGCTCAAATCCAAAAAGCTGGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCGAAGATTAGCAAGATGGACAGGACCTCCATTCTCGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCATATAAACCTCTTGGGCAATTCTAAGGAACTAAAGCCAAATGAAGCAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGAAGACAGCATGACACAAGGATTAGCATCTGCTGTGCTACAAAGCTGGGATTACTCCTGTCCACAGTGAATACCCTAGAAGCATTAGGCCTTGAGATTCATCAGTGTGTTATAAGCAACTTCAATGATTTTTCAATGCAAGCAACCTGCTCTGAGGCAGCTGAGCAGAGAAATTGTACGAGCCCGGAAGATATAAAGCAAGCATTATTCAGAAATGCAGGTTATGGTGGAAGATGTCTGTAA 996 0.4257 MELSQLGFLDELLAPRKDTWSALSTGLNELLPSAWSFDSFDENQGLATLNPSFAAFSTPLDHRFECPYGSEATHPFVDEFSLPELESLYTRNDESAPVLPQEDNPSLEDEEFGFLGSDNQSLEQAKNGCKIEEQLTEIPVFNMGLCAEKKLKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNHINLLGNSKELKPNEAMVRNSPKFDVERRQHDTRISICCATKLGLLLSTVNTLEALGLEIHQCVISNFNDFSMQATCSEAAEQRNCTSPEDIKQALFRNAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2991g00012 331 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Vium2991g00012 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
Vium2991g00012 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Vium2991g00012 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 75 325 - -
Vium2991g00012 331 SMART finulus 164 213 IPR011598 GO:0046983
Vium2991g00012 331 Gene3D - 149 223 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2991g00012 Vium-Chr2991 133326 135328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2991g00012 149 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.022 4.55e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2991g00012 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2991g00012 - - gmx:100806571 590.882