Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2991g00011 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTGCTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCTACTGGGTTGAATGAGTTACTTCCTAGTGCTTGGAGCTTTGACTCTTTTGATGAGAACCAGGGTTTAGCAACTTTGAATCCTTCATTTGCTGCATTTTCAACCCCACTAGACCACAGGTTTGAATGTCCTTATGGAAGTGAAGCAACCCACCCTTTTGTTGATGAGTTCTCATTGCCTGAGCTTGAATCATTATACACCAGAAATGATGAGTCAGCACCAGTTCTCCCACAAGAAGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGTGATAACCAGAGTTTGGAGCAAGCAAAAAATGGCTGCAAAATTGAGGAACAATTGACAGAGATTCCAGTCTTCAACATGGGTTTGTGTGCAGAGAAAAAGCTCAAATCCAAAAAGCTGGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCGAAGATTAGCAAGATGGACAGGACCTCCATTCTCGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCATATAAACCTCTTGGGCAATTCTAAGGAACTAAAGCCAAATGAAGCAATGTTTGATGTTGAGAGAAGACAGCATGACACAAGGATTAGCATCTGCTGTGCTACAAAGCTGGGATTACTCCTGTCCACAGTGAATACCCTAGAAGCATTAGGCCTTGAGATTCATCAGTGTGTTATAAGCAACTTCAATGATTTTTCAATGCAAGCAACCTGCTCTGAGGCAGCTGAGCAGAGAAATTGTACGAGCCCGGAAGATATAAAGCAAGCATTATTCAGAAATGCAGGTTATGGTGGAAGATGTCTGTAA 978 0.4254 MELSQLGFLDELLAPRKDTWSALSTGLNELLPSAWSFDSFDENQGLATLNPSFAAFSTPLDHRFECPYGSEATHPFVDEFSLPELESLYTRNDESAPVLPQEDNPSLEDEEFGFLGSDNQSLEQAKNGCKIEEQLTEIPVFNMGLCAEKKLKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNHINLLGNSKELKPNEAMFDVERRQHDTRISICCATKLGLLLSTVNTLEALGLEIHQCVISNFNDFSMQATCSEAAEQRNCTSPEDIKQALFRNAGYGGRCL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2991g00011 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 219 IPR036638 GO:0046983
Vium2991g00011 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 75 319 - -
Vium2991g00011 325 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Vium2991g00011 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Vium2991g00011 325 SMART finulus 164 213 IPR011598 GO:0046983
Vium2991g00011 325 Gene3D - 149 223 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2991g00011 Vium-Chr2991 133326 135339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2991g00011 149 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.416 7.24e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2991g00011 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2991g00011 - - gmx:100806571 572.392