Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2991g00006 ATGTCGCCGCCGGCGGTGGTAACGGAGGAGGATGGGCTGAGCAAGGTGTCGTCGACTGTAGCGTCTGGTTCTTCGCAGTCCTTGGATTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAAAGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCATCTACTGTGCCAGGCTTGGGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACGGAGTTGAGGCTGGGTCTTCCCGGGTCACAGTCACCTGAAAGAGATCCTGATCTTTTCTCTTTAAGCTCAGCAAAGCTCGACGAGAAGCCACTGTTCCCATTAGTTCCTACTAAAGACGGGATTTGCTTGTCGTCCCAGAAAACTGTTGTTTCCGGCAACAAGAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTTACTGGTAATACGGGGATGAACGCAATGCTGTCACCTAGGCCTTCTTGTGCTCAGCCTTCTGCAATGAAAGAAATTCCAAGCAAGTTGCAAGAACGGCCTTGTTCAGCTAATAATGGAACTGGTCATAACCATACAGGTGCTTCTATAAGTGGCAGTGCACCGGCTTCTAAGGCACAGGTTGTCGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACTACATCCAACAAGAACAATGATGAAGTGGATGGAAAACCCGGTGGTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAAGTAGATCTAAGAAGTTATTCAACATATCAGGAGCTATCTTCTGCACTTGAGAAAATGTTCAGCTGTTTTACCTTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGATCTTCTGCACGGTTCAGAGTATGTCGTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCCTGGGAAATGTTCATTGATACTTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGACTTAA 1074 0.4693 MSPPAVVTEEDGLSKVSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPGLGDEKKENMNLKATELRLGLPGSQSPERDPDLFSLSSAKLDEKPLFPLVPTKDGICLSSQKTVVSGNKRGFADTMDGFSQGKFTGNTGMNAMLSPRPSCAQPSAMKEIPSKLQERPCSANNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGGGALFVKVSMDGAPYLRKVDLRSYSTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2991g00006 357 MobiDBLite consensus disorder prediction 175 199 - -
Vium2991g00006 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 344 IPR003311 GO:0005634|GO:0006355
Vium2991g00006 357 MobiDBLite consensus disorder prediction 1 25 - -
Vium2991g00006 357 FunFam Auxin-responsive protein 232 349 - -
Vium2991g00006 357 Gene3D - 234 351 - -
Vium2991g00006 357 Pfam AUX/IAA family 75 348 IPR033389 -
Vium2991g00006 357 ProSiteProfiles PB1 domain profile. 237 341 IPR000270 GO:0005515
Vium2991g00006 357 SUPERFAMILY CAD & PB1 domains 234 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2991g00006 Vium-Chr2991 88006 92702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2991g00006 239 342 B3 DNA Binding Superfamily AT5G37020 32.692 5.50e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium2991g00006 AUX_IAA 1.4e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2991g00006 K14484 - gmx:547502 666.766