Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2990g00006 ATGGAGAATAATATGTACAGTGCTTCACTGGACATTGCTGGCAGAAATTCTGCTGTCATAGAAGAAATTGCACAGCATTTAGCACCGAAGCCACTGATTCAATGCTACTCATTTGACCTCAATAACCAAAACCACATTATAAATGGAATTCCAGTTCTTGCTGCAGAACAAGGTGAACCTAGAAGTGATGTCCATGTAGATGGTTGCTTCATAAACCCAGCTAGAATTGCTGATTCCAATTCATTTGTCTCAATACAAGGAAAGAGTATTGTAGGAGATGCCTCAAATCCCATTAACAGTGCCATTCAAGAGCATTTAGCTGGAGGAAGGCCAATTGCTTCTGCTGCTTCACTTGCTGATAGAATAGGCCTTCAAGAAAATCTGCAGAGTTCAGCAGCTTTGCCTCATTCAATGAGTTCATTGGAGGCACTGGGACCATACATCTTCAATAATTGGCAAGATACATCAAACCCTTTGGCTGCAACTTTTGGTGATCATGCCTATGATGAATTATCAAGTATTCAGAAGTGGAATGTGAACAAGTTTCTGAAAGCTCCAGAGGCCAATGGGACTGAGATCCAGGCTTATTCTTCCATAGGAAACCTGGTTCAAAATGGATGGACATCATCAAGTGTTGCAAGCTTGGGAAATTTTGCCTATAATTCCTCTAATTGCAGTAAAGAACTGTCACTAAGTCTTTCAAGATCTCCTCCAACTACAGGTCAGTGCTCAGAGATGAGCTGCTCCAACGCATCTCGCAGCATGAATGGAAGAAGTTCAGGCTTGGAGCAACCTTCCTGCAGCAGCAAGGAACTGTGTATGAGATTAGGTTCCAACAAACATGTCCAGTTTTCACCAGCAATATTGGGGTCCAGATATCTTGCTGGAGTTCAAGAGATATTTGCTCAAATTGCCACATACTCATTTGAAAATGTAGAGCTAATGAATTACCCAGCTTCTGGTGTTAGAGCAGGAGGAAATAAGTCAGCTTCAGCTTTCATACCAAAGAGAAGGGTAGCGAGTAATCAGAATGAAAATTCAATGTATGGAGCACATGCAGAAGAGTCTCCATCGGAAAGACATGCAGCTGATTCAAACAAATCCCAACTTCTCATGCTTCTACAACTGGTGGAGAATGGATATAGCCAGTGTTTGGATGAGGTTCATACTGTGGCATCTGCGTTCCATGCTGCTACTGAGTTGGATCCACACATGCATGCACATTTTGCACTTCAAACCATCTCTCTCTTGTACAAGGACTTGAGAGAGAGGATTAGCAACTGTATTCGTGCAATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTCTTGAAACTTCGTTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAGAAAAAAGATCAGTTATGGAGACCCCAAAGGGGATTGCCAGAGAGATCTGTCTCAGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTCATTGGCAGTAAAAAGTGGGTTAACAAGAAGCCAGGTATCCAATTGGTTTATCAATGCACGTGTTCGATTATGGAAGCCTATGATTGAGGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGATTGGAGAGCACTCACAGAAGCAGGATGAGCATGAACAGTCAAATGTTGAATATCAATTGA 1710 0.4205 MENNMYSASLDIAGRNSAVIEEIAQHLAPKPLIQCYSFDLNNQNHIINGIPVLAAEQGEPRSDVHVDGCFINPARIADSNSFVSIQGKSIVGDASNPINSAIQEHLAGGRPIASAASLADRIGLQENLQSSAALPHSMSSLEALGPYIFNNWQDTSNPLAATFGDHAYDELSSIQKWNVNKFLKAPEANGTEIQAYSSIGNLVQNGWTSSSVASLGNFAYNSSNCSKELSLSLSRSPPTTGQCSEMSCSNASRSMNGRSSGLEQPSCSSKELCMRLGSNKHVQFSPAILGSRYLAGVQEIFAQIATYSFENVELMNYPASGVRAGGNKSASAFIPKRRVASNQNENSMYGAHAEESPSERHAADSNKSQLLMLLQLVENGYSQCLDEVHTVASAFHAATELDPHMHAHFALQTISLLYKDLRERISNCIRAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKKKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHSLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGLESTHRSRMSMNSQMLNIN 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2990g00006 569 SMART prehox3 282 427 IPR006563 -
Vium2990g00006 569 Gene3D - 473 552 - -
Vium2990g00006 569 ProSiteProfiles 'Homeobox' domain profile. 467 530 IPR001356 GO:0003677
Vium2990g00006 569 SMART HOX_1 470 534 IPR001356 GO:0003677
Vium2990g00006 569 Pfam Associated with HOX 288 426 IPR006563 -
Vium2990g00006 569 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 234 561 - -
Vium2990g00006 569 SUPERFAMILY Homeodomain-like 472 539 IPR009057 -
Vium2990g00006 569 CDD homeodomain 470 531 IPR001356 GO:0003677
Vium2990g00006 569 Pfam Homeobox KN domain 487 526 IPR008422 GO:0003677|GO:0006355
Vium2990g00006 569 MobiDBLite consensus disorder prediction 236 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2990g00006 Vium-Chr2990 61494 65062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2990g00006 187 543 Homeobox Transcription Factor Family AT4G32980 49.454 1.06e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium2990g00006 POX 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2990g00006 - - gmx:100812648 939.488