Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2987g00004 ATGCATCTTGGTCTGGAGATAGGACAAGATAATGATGATGATTTGAAGGTTCAGGTGGTGGCTTCATTGGTTTGGATGATTGAGAGTTTGAGAACTTGGAGACCAGAAAATAACCCTTTGGATCTCAACAACCTTCCCGATGACTACTCCAGAGATGGCATACAGCTCTTCCAAGACAGTTTCTCATCGGAATACCAGAGAAACAAAGACATAGTGAGAGATGATGAGAATGAGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAATCACAGGCTCTTGGGGGACACATGAACCGTCACCGACAAGAGAGGGAAACAGAGACACTGAACCATGCTCGTCAGCTGGTCTACCGTAACGATCATACCCTAAGCACTCCACCCGCCCCCAACCTAGGATGCTGTCAACCAATAGCATCAGGGGGCTATCATCCTGCAAGTAGCATGGGAGACCCAACAATGCATGCAAGGTTCCCAAGATACATGTCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCATCTTCGTTCCATCTACCAACTCCACCACCGCCGCAGCTGCAACTGCATCAACCATCTCATCATCTCTTGTTAGCCTCACCTCCTACACCACCCCTTCCTTTTCCACCGCCACCGTCGTATTCTCACCACCATCATGCAGTGAATGACTACTATGTGGGTCACGTTCTGGGCAGCAGCACCAAGAATCACGTCCTCAGTGACTGCACTTGCATCGGGGCACCCGTAGGACAAACATTGGTGGGTGGTGGCAAAGACAGGTCACTGCAGACTCCTCAGGGCGATACGTTGAATTGGGGACGGGGCTATTCAGGAACACGGCAGCTATTGGATACTCCTTCAGCGATCAATCGGTGTCACGAAGGGTTTCAATGA 897 0.5028 MHLGLEIGQDNDDDLKVQVVASLVWMIESLRTWRPENNPLDLNNLPDDYSRDGIQLFQDSFSSEYQRNKDIVRDDENEKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVYRNDHTLSTPPAPNLGCCQPIASGGYHPASSMGDPTMHARFPRYMSGSGSGSGSGSSSFHLPTPPPPQLQLHQPSHHLLLASPPTPPLPFPPPPSYSHHHHAVNDYYVGHVLGSSTKNHVLSDCTCIGAPVGQTLVGGGKDRSLQTPQGDTLNWGRGYSGTRQLLDTPSAINRCHEGFQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2987g00004 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Vium2987g00004 298 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Vium2987g00004 298 MobiDBLite consensus disorder prediction 160 191 - -
Vium2987g00004 298 PANTHER ZINC FINGER PROTEIN JAGGED 68 214 IPR045320 GO:0003700
Vium2987g00004 298 SUPERFAMILY beta-beta-alpha zinc fingers 77 109 IPR036236 -
Vium2987g00004 298 FunFam Zinc finger protein STAMENLESS 1 58 128 - -
Vium2987g00004 298 Gene3D Classic Zinc Finger 59 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2987g00004 Vium-Chr2987 32504 45355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2987g00004 36 123 C2H2 Transcription Factor Family AT1G13400 65.909 6.73e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2987g00004 - - vra:106776856 398.667