Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2982g00016 ATGCACTACCAATTAACACAAAAAATGGCATCTCATCCATTCATTCTTTCTATCACCATTTTCAAGCTAGTAATAATCTTCTTCTCTCAATCTTCCACAGCATCAGACACCATCACTCAATCTCAGCCACTTCATGATGATGGCAGTACCTTAGTTTCCAATGATGGAACCTTTGAGTTAGGGTTCTTCAGTCCCGGTAGTTCCACAAACCGCTACATAGGAATATGGTACAGAATCATCCCAGTCAAAACCATTGTCTGGGTTGCCAACCGTGACAGCCCAATCGAAGGCAACAACAACATGTTAACCATCACCAATGAAGGCAACATGGTGCTTCTTGACAACAACAATGAAACTGTCTGGTCAACAAACATCACATCACTCACAACTCAACCTCTGTTGAATCCCATGGTGCAGCTCTTAGACACTGCAAACTTGGTAGTTAAAGAAGGGAATAGCAGCAACAACAGCGACAATGAGAAAGAAGAAAGCTTTTTGTGGCAAAGCTTTGACTACCCTTGTGATACTCTCTTGCCAGGAATGAAGCTTGGATGGGACCTTAAAAGGGGTATTGATAGGAAGTTAAGGGCATGGAAAAGCTGGGATGATCCATCTTCAGGGAACTTAACTTGGGGTATGCTCCTTAGTAGTTACCCTGAATTGGTTCTGAAGAAAGGTTCGGTTGAGTATCAAAGAAGTGGACCTTGGAATGGAGCAGGGTTCAGTGGCCAACCTGTGCTGAGAATCACTCCAATTGTTGACACAAAATTTGTGAATGATTCAAATGAGCTTTACTACTCATACTCTCTCAGGAACAAGTCTGTGATCTCAATAACTTACTTGAACCAAACCCTTCTTCATCGCCATCGCATCACATGGATTCCTGAAAACAAAACTTGGAGGGTTTATGAGTCTGTTCCTAGAGATGATTGTGATCCTTATAACACATGTGGTCCAAATGGAAATTGCAAGGTTAACGAGACACCGATTTGCCAGTGTCTGGAATGGTTTGAACCAAAGTCTCCCCAGAATTGGAACTCGTTTGACTGGACACAAGGATGTGTACGCAGTGAACCTTGGAGTTGTGGGGTGAAAGATCAAGATGGTTTTCGAAGATTTGCTTCGATGAAAGTTCCTGATACGAGAAGTTCTTCGACTTATGGAAACATGTCACTTGAAGATTGTAGGATCGAATGCTTGAAAAATTGTTCTTGCATGGCTTATTCAAACTTGGACATAAGGGAAGGTGGCAGTGGTTGTGCCATTTGGTTTGGTGATCTCATTGATTTGAAATTGGTTCAAGCAAGCCGACAAGACATATACATTCGAATGGCTGTTTCAGGTACAGATGAAGATACAAGAAAAAGGGTTTTAGTAATCACGATTCCAATTGTGTCGGTCACTATTTTGCTACTTGTTGTCTTCTTATGTATTTACATGAGAAAAAGAAAGCATAAAGGAAATGAACACGGCACAAAGAATATTGTATCAACCGAAGATGATGAAGAAAACCAAGATGTTGAGCTTCCTTTGTTTGATCTCGCTTTAATATCCGTTGCCACCAATGGTTTCTCAAAAGATAACAAGCTTGGAGAAGGTGGTTTTGGACCAGTATATAAGGGTACACTCCCTAATGGAAGAGATATTGCCATCAAAAGACTCTCAACGAGTTCATCTCACACTAGTTGTCAAGGGATCAAAGAATTCAAGAATGAAGTTATACTGTGTGCAAAACTTCAACATCGAAATCTTGTTAAGGTTCTTGGTTGTTGTATTCAAGAAGAAGAGAAGATGTTAATATATGAATACATGCCCAACAAAAGCTTAGATTCATTTCTTTTCGATTCAACTCAAAGTAAACTTTTAGATTGGTCAAAACGCTTCAACATCATATGTGCAATTGGTCGTGGACTTCTTTATCTACATCAAGATTCTAGACTAAGGATCATACATAGAGATCTAAAAGCAAGTAATATTTTGCTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGCTTAGCAAGACTTTGTGGCGATGATCAAATTGAAGGGAATACAAAGAGAGTGGTCGGAACATATGGTTATATGGCACCAGAATATGCCATTGATGGTTTATTCTCCATAAAATCGGATGTATTCACCTTTGGCATACTATTGTTGGAGATTGTGAGTGGAAAGAAAAATACAGGAGTTACATATACAAGTGATACTTGTAATCTCATTGGACATGCTTGGAAATTGTGGAAAGAGAATGATCCAACAAAATTGGTTGATATGTATTTAGAAGACTCATACGTTGTATCGGAAGCCTTACGTTGCATTCAAGTTGGTCTTTTATGTCTACAACACCATCCGAATGACAGACCAAACATGGCATCAGTGGTTGTTATGTTGACCAATGAAACTATTTTAGCTCAGCCAAAGGAGCCTGGTTTCTTGATGGAAAGAGTGGTCGCTAATGAAGTAGAATCTTCTACTGAAAAACAAATATCTTTTTCAGTTAACGAGGTGTCTATTTCACTAGTGCATGCTAGATAA 2541 0.3924 MHYQLTQKMASHPFILSITIFKLVIIFFSQSSTASDTITQSQPLHDDGSTLVSNDGTFELGFFSPGSSTNRYIGIWYRIIPVKTIVWVANRDSPIEGNNNMLTITNEGNMVLLDNNNETVWSTNITSLTTQPLLNPMVQLLDTANLVVKEGNSSNNSDNEKEESFLWQSFDYPCDTLLPGMKLGWDLKRGIDRKLRAWKSWDDPSSGNLTWGMLLSSYPELVLKKGSVEYQRSGPWNGAGFSGQPVLRITPIVDTKFVNDSNELYYSYSLRNKSVISITYLNQTLLHRHRITWIPENKTWRVYESVPRDDCDPYNTCGPNGNCKVNETPICQCLEWFEPKSPQNWNSFDWTQGCVRSEPWSCGVKDQDGFRRFASMKVPDTRSSSTYGNMSLEDCRIECLKNCSCMAYSNLDIREGGSGCAIWFGDLIDLKLVQASRQDIYIRMAVSGTDEDTRKRVLVITIPIVSVTILLLVVFLCIYMRKRKHKGNEHGTKNIVSTEDDEENQDVELPLFDLALISVATNGFSKDNKLGEGGFGPVYKGTLPNGRDIAIKRLSTSSSHTSCQGIKEFKNEVILCAKLQHRNLVKVLGCCIQEEEKMLIYEYMPNKSLDSFLFDSTQSKLLDWSKRFNIICAIGRGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARLCGDDQIEGNTKRVVGTYGYMAPEYAIDGLFSIKSDVFTFGILLLEIVSGKKNTGVTYTSDTCNLIGHAWKLWKENDPTKLVDMYLEDSYVVSEALRCIQVGLLCLQHHPNDRPNMASVVVMLTNETILAQPKEPGFLMERVVANEVESSTEKQISFSVNEVSISLVHAR 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2982g00016 846 Gene3D Transferase(Phosphotransferase) domain 1 604 810 - -
Vium2982g00016 846 Gene3D Phosphorylase Kinase; domain 1 484 603 - -
Vium2982g00016 846 Pfam PAN-like domain 362 430 IPR003609 -
Vium2982g00016 846 SUPERFAMILY Protein kinase-like (PK-like) 506 810 IPR011009 -
Vium2982g00016 846 CDD STKc_IRAK 530 801 - -
Vium2982g00016 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Vium2982g00016 846 CDD PAN_AP_plant 361 445 - -
Vium2982g00016 846 ProSiteProfiles EGF-like domain profile. 307 343 IPR000742 -
Vium2982g00016 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 31 170 - -
Vium2982g00016 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 790 - -
Vium2982g00016 846 Pfam S-locus glycoprotein domain 232 341 IPR000858 GO:0048544
Vium2982g00016 846 Pfam D-mannose binding lectin 84 199 IPR001480 -
Vium2982g00016 846 ProSiteProfiles PAN/Apple domain profile. 362 445 IPR003609 -
Vium2982g00016 846 Gene3D - 29 170 IPR036426 -
Vium2982g00016 846 CDD B_lectin 47 173 IPR001480 -
Vium2982g00016 846 SMART blect_4 41 173 IPR001480 -
Vium2982g00016 846 Pfam Domain of unknown function (DUF3403) 800 846 IPR021820 GO:0004674
Vium2982g00016 846 ProSiteProfiles Protein kinase domain profile. 524 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2982g00016 846 SMART ntp_6 365 444 IPR003609 -
Vium2982g00016 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 204 IPR036426 -
Vium2982g00016 846 ProSiteProfiles Bulb-type lectin domain profile. 35 161 IPR001480 -
Vium2982g00016 846 PIRSF SRK 7 846 IPR024171 GO:0004674
Vium2982g00016 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
Vium2982g00016 846 SMART serkin_6 524 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2982g00016 846 Pfam Protein tyrosine and serine/threonine kinase 526 797 IPR001245 GO:0004672|GO:0006468
Vium2982g00016 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 488 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2982g00016 Vium-Chr2982 148232 157784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2982g00016 457 814 Receptor kinase-like Gene Family AT4G23190 51.105 1.26e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium2982g00016 PK_Tyr_Ser-Thr 8.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2982g00016 - - gmx:100776310 1079.7