Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2982g00014 ATGGCCTCCGAGAAGAAACTGTCCAATCCCATGAGAGAAATCAAAGTGCAGAAACTCGTCCTCAACATCTCCGTCGGCGAGAGCGGTGATCGTCTCACTCGCGCTGCCAAGGTGCTCGAACAACTCAGTGGCCAAACTCCTGTTTTCTCCAAAGCAAGGTACACTGTGCGTTCCTTTGGGATTAGAAGGAACGAGAAGATCGCATGCTATGTGACGGTGAGGGGTGACAAGGCGATGCAGCTTTTGGAAAGTGGGTTGAAAGTTAAGGAGTACGAGCTCCTGAGGAGAAACTTCAGCGACACTGGTTGCTTCGGCTTCGGCATTCAGGAGCACATTGATTTGGGAATCAAGTATGATCCTTCTACTGGTATTTATGGAATGGATTTCTTTGTTGTTCTGGAGCGCCCTGGATATCGCGTGGGACGTCGTCGTCGTTGCAAGTCTCGTGTTGGAATCCAGCACTGA 465 0.5032 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQH 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2982g00014 154 FunFam 60S ribosomal protein L11 2 154 - -
Vium2982g00014 154 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Vium2982g00014 154 Gene3D - 3 154 IPR022803 -
Vium2982g00014 154 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 154 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vium2982g00014 154 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 153 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vium2982g00014 154 Pfam Ribosomal protein L5 9 62 IPR031310 -
Vium2982g00014 154 Pfam ribosomal L5P family C-terminus 66 149 IPR031309 -
Vium2982g00014 154 SUPERFAMILY RL5-like 8 153 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2982g00014 Vium-Chr2982 140482 142740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2982g00014 1 154 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 96.104 7.43e-110 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2982g00014 K02868 - mus:103987828 290.812