Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2982g00013 ATGGGTTCGATCGAAATCCCAACCGCCAACGGCAACGGAAAATCGCCGCCCTTCGACGGCGCAGAGACGGCGTTGGAGTCCAACACGTCGAAGCGGCGGAGATCGTCGGTGCTCCCTCTGGAGGTCGGCACGCGCGTCATGTGCCGGTGGAGGGACAACAAGTACCATCCCGTGAAGGTCATCGAACGGCGGAAGGTTCACAACGCCGATTATGAGTATTACGTCCATTACACCGAGTTCAATAGAAGGCTTGATGAGTGGGTTAGGCTTGAACAGCTCGATCTTGATTCAGTGGAGGCGGTTGTTGATGAGAAAGTGGAGGAGAAGGGCGCAACTGGTTTGAAGATGACACGCCACCAAAAGAGGAAGATTGATGAGACTCATGTAGAGGGACATGAGGAGCTTGATGCTGCCAGTTTGCGAGAACATGAGGAATTTACAAAAGTGAAAAATATAGCTACTATTGAGCTTGGAAGATATGAGATTGAGACATGGTACTTCTCCCCCTTCCCTCCAGAATACAATGACTGTTTGAAGCTGTTCTTTTGTGAGTTTTGCCTCAATTTCATGAAGCGCAAAGAACAGCTTCAGAGGCATATGAGGAAATGCGATCTGAAGCATCCCCCTGGTGATGAGATTTACAGAAGTGGTACACTGTCAATGTTTGAGGTTGATGGAAAGAAGAACAAGGTTTATGGGCAGAATCTTTGTTATTTGGCCAAGTTATTTCTTGATCACAAGACACTCTATTATGACGTAGATCTGTTTCTGTTTTATGTTTTTTGTGAATGTGATGATCGAGGTTGTCACATGGTTGGCTATTTCTCCAAGGAAAAACATTCCGAGGAATCTTACAATTTGGCATGTATCCTCACCCTTCCACCTTACCAAAGGAAAGGCTATGGCAAATTTCTAATTGCTTTCTCATACGAACTGTCGAAGAAGGAGAGCAAAGTTGGGACACCTGAAAGACCCCTTTCAGATCTTGGACTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTCTTGGACATTCTGAAGAAGCACAAGGGGAACATTTCTATCAAGGAACTGAGTGATATGACTGCCATTAAAGCTGAAGATATATTAACAACCCTACAGAGTCTAGAGTTGATTCAATACAGGAAAGGTCAACATGTGATCTGTGCTGATCCCAAAGTGTTGGATCGCCATCTTAAAGCTGCTGGAAGGGGCGGCCTGGAGGTTGATGTTAGCAAATTGATCTGGACTCCTTATAAAGAACAGAGTTGA 1272 0.456 MGSIEIPTANGNGKSPPFDGAETALESNTSKRRRSSVLPLEVGTRVMCRWRDNKYHPVKVIERRKVHNADYEYYVHYTEFNRRLDEWVRLEQLDLDSVEAVVDEKVEEKGATGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLKLFFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVFCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKESKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2982g00013 423 FunFam Histone acetyltransferase 30 147 - -
Vium2982g00013 423 FunFam Histone acetyltransferase 326 405 - -
Vium2982g00013 423 FunFam Histone acetyltransferase 206 334 - -
Vium2982g00013 423 Gene3D - 326 406 IPR036388 -
Vium2982g00013 423 SUPERFAMILY Chromo domain-like 34 148 IPR016197 -
Vium2982g00013 423 Pfam MYST family zinc finger domain 149 203 IPR040706 -
Vium2982g00013 423 Gene3D - 206 418 - -
Vium2982g00013 423 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 147 418 IPR002717 GO:0004402|GO:0006355|GO:0016573
Vium2982g00013 423 Pfam RNA binding activity-knot of a chromodomain 40 95 IPR025995 -
Vium2982g00013 423 Gene3D - 148 204 - -
Vium2982g00013 423 Pfam MOZ/SAS family 208 385 IPR002717 GO:0004402|GO:0006355|GO:0016573
Vium2982g00013 423 FunFam Histone acetyltransferase 146 203 - -
Vium2982g00013 423 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 148 419 IPR016181 -
Vium2982g00013 423 CDD CBD_MOF_like 43 109 - -
Vium2982g00013 423 PANTHER HISTONE ACETYLTRANSFERASE 45 419 - -
Vium2982g00013 423 MobiDBLite consensus disorder prediction 1 36 - -
Vium2982g00013 423 Gene3D - 28 147 - -
Vium2982g00013 423 SMART chromo_7 54 110 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2982g00013 Vium-Chr2982 131797 138114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2982g00013 8 423 C2H2 Transcription Factor Family AT5G64610 87.915 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2982g00013 K11308 - gmx:100819116 819.69