Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2982g00003 ATGGCTTTGAGGTTTATAGCAGTTTCGGCGGTTTCTACATTTCTAAGCTTTGTGGGTCTTCAGTTCTGCACAGACTTGTCTTTGGATAAACTTAGATCAGATGGACTAATAGGCTGGAATTTAATTCACTTGGACGATGCCAGCCAAGACATTGAGTTACCCTCGGGTTTGTACACCACCATAGGGCTACTGCTGAATTGCATGATCAATTTATTTGTCCTTCTTAATCTTTGTATCAAGGCTGTGTTTTTCTCAGAGTTATATGCTTCTGAAACTCGTAAACTGATTGAGCGTCTAGTTAATTATGTCATTTACAAGGGAACATTTCTACCACTGATTGTGCCACCAACAATTTACCAAGCAGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGCTCACTGAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCATCTGCCACACCCTGGACGTATCTTCGTGTATATTCGGCATTATTATTTGTTTTCATGGCTGATGTTCTCTGGATAAGGCTTTGTCTGACAATATATAGAACACATGGGTCCTCTATGTATCTGCTATTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCTATTTTGGTACATGGCTTTCAGTTGCTTGACATATGGCTGCATCATTCAGCTTGCAATAGGGATTTCCGATCACCTAAACTGCTTGACACATTAACTGCAGGTTCATTGTTGGAATGGAAGGGAATTCTTATTCGTAACTTGGGGTTTTTCCTAGACATGGCTACATTTTTCATGGCACTTGGCCATTACTTGTATATATGGAGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTACTTAGTGCAATAGTAAATCGCATAAAAGGCTTTATCAAACTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACAGAGGAGCTAAGAGCGTATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCATCTTGCATGTTTAAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACTTGTCGAAAGCCACTTTTTGAGGGCGTCCCTGAAAATGAAGCAAGCTCTGACACAGGGACTATGTCTAGTGATGAACAGCTTGCACGCCAAATTAGTGCTGGATTAGACCGGCCAAACAATGCTAGACATGCCATGCCTACCGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGAGCCGGTCCGTCTACTGCTATTAGAACAGTTGGATTGGGAAGAGTTCAAATGA 1419 0.42 MALRFIAVSAVSTFLSFVGLQFCTDLSLDKLRSDGLIGWNLIHLDDASQDIELPSGLYTTIGLLLNCMINLFVLLNLCIKAVFFSELYASETRKLIERLVNYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMADVLWIRLCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNRDFRSPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIVNRIKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFEGVPENEASSDTGTMSSDEQLARQISAGLDRPNNARHAMPTGLYPNQTLNTPEGVQGWTQVGCILGQIKVLMEPVRLLLLEQLDWEEFK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2982g00003 472 SUPERFAMILY RING/U-box 324 385 - -
Vium2982g00003 472 Pfam Ring finger domain 335 379 IPR001841 -
Vium2982g00003 472 ProSiteProfiles Zinc finger RING-type profile. 337 379 IPR001841 -
Vium2982g00003 472 SMART ring_2 337 378 IPR001841 -
Vium2982g00003 472 CDD RING-H2_AMFR 335 382 - -
Vium2982g00003 472 FunFam E3 ubiquitin protein ligase RIN2 310 389 - -
Vium2982g00003 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 385 IPR013083 -
Vium2982g00003 472 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 6 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2982g00003 Vium-Chr2982 25564 32535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2982g00003 57 420 C3H Transcription Factor Family AT3G16090 27.226 4.47e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2982g00003 K10636 - gmx:100819656 820.846