Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2982g00002 ATGGCTTTGAGGTTTATAGCAGTTTCGGCGGTTTCTACATTTCTAAGCTTTGTGGGTCTTCAGTTCTGCACAGACTTGTCTTTGGATAAACTTAGATCAGATGGACTAATAGGCTGGAATTTAATTCACTTGGACGATGCCAGCCAAGACATTGAGTTACCCTCGGGTTTGTACACCACCATAGGGCTACTGCTGAATTGCATGATCAATTTATTTGTCCTTCTTAATCTTTGTATCAAGGCTGTGTTTTTCTCAGAGTTATATGCTTCTGAAACTCGTAAACTGATTGAGCGTCTAGTTAATTATGTCATTTACAAGGGAACATTTCTACCACTGATTGTGCCACCAACAATTTACCAAGCAGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGCTCACTGAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCATCTGCCACACCCTGGACGTATCTTCGTGTATATTCGGCATTATTATTTGTTTTCATGGCTGATGTTCTCTGGATAAGGCTTTGTCTGACAATATATAGAACACATGGGTCCTCTATGTATCTGCTATTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCTATTTTGGTACATGGCTTTCAGTTGCTTGACATATGGCTGCATCATTCAGCTTGCAATAGGGATTTCCGATCACCTAAACTGCTTGACACATTAACTGCAGGTTCATTGTTGGAATGGAAGGGAATTCTTATTCGTAACTTGGGGTTTTTCCTAGACATGGCTACATTTTTCATGGCACTTGGCCATTACTTGTATATATGGAGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTACTTAGTGCAATAGTAAATCGCATAAAAGGCTTTATCAAACTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACAGAGGAGCTAAGAGCGTATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCATCTTGCATGTTTAAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACTTGTCGAAAGCCACTTTTTGAGGGCGTCCCTGAAAATGAAGCAAGCTCTGACACAGGGACTATGTCTAGTGATGAACAGCTTGCACGCCAAATTAGTGCTGGATTAGACCGGCCAAACAATGCTAGACATGCCATGCCTACCGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTACTTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGAGCCGGTCCGTCTACTGCTATTAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATTCTTCTTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCGAGTGCTTCAACCATTCCTCCTCCTAATGGAAGATCATTAGGACGAACTGGTAGTTTACATTTAAGGACTGCTTCACAGCCTCCAAATGATAATGTGGCTAATATACTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATGATATTCCAGGACTTGCAAAGAACAAATTCTGTTATGGTTACTGTGAATAATCTTCTTCAAATGTGA 1758 0.4209 MALRFIAVSAVSTFLSFVGLQFCTDLSLDKLRSDGLIGWNLIHLDDASQDIELPSGLYTTIGLLLNCMINLFVLLNLCIKAVFFSELYASETRKLIERLVNYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMADVLWIRLCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNRDFRSPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIVNRIKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFEGVPENEASSDTGTMSSDEQLARQISAGLDRPNNARHAMPTGLYPNQTLNTPEGVTWRGAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFEDSSWNLWPINPSQASASASTIPPPNGRSLGRTGSLHLRTASQPPNDNVANILAMAETVREVLPHIPDDMIFQDLQRTNSVMVTVNNLLQM 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2982g00002 585 FunFam E3 ubiquitin protein ligase RIN2 544 584 - -
Vium2982g00002 585 CDD RING-H2_AMFR 335 382 - -
Vium2982g00002 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 385 IPR013083 -
Vium2982g00002 585 Pfam CUE domain 549 585 IPR003892 GO:0043130
Vium2982g00002 585 CDD CUE_RIN3_plant 546 583 IPR035667 -
Vium2982g00002 585 ProSiteProfiles CUE domain profile. 545 585 IPR003892 GO:0043130
Vium2982g00002 585 ProSiteProfiles Zinc finger RING-type profile. 337 379 IPR001841 -
Vium2982g00002 585 SMART ring_2 337 378 IPR001841 -
Vium2982g00002 585 MobiDBLite consensus disorder prediction 510 537 - -
Vium2982g00002 585 FunFam E3 ubiquitin protein ligase RIN2 310 389 - -
Vium2982g00002 585 Gene3D - 544 584 - -
Vium2982g00002 585 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 6 585 - -
Vium2982g00002 585 Pfam Ring finger domain 335 379 IPR001841 -
Vium2982g00002 585 SUPERFAMILY RING/U-box 324 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2982g00002 Vium-Chr2982 25564 34496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2982g00002 57 420 C3H Transcription Factor Family AT3G16090 27.226 5.00e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2982g00002 K10636 - gmx:100820578 1087.4