Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium2982g00001 | ATGGAGATGAGGAAATCATGTGGGTTTTTCTTCTTGCTCCTTCTTCTGGTCTTTGCTTCCCAGGTGGTGGTGCAGACGGAGGGAAGAGTGTGCGAGTCACAGAGCCACGGGTTCAAGGGTGCGTGTACTGGAGACCATAATTGTGCTCTGGTATGCAGGAACGAAGGTTTCTCCGGTGGGAACTGCAGAGGCTTCCGCCGACGATGCTTCTGCACCAAGATTTGCTGA | 228 | 0.5307 | MEMRKSCGFFFLLLLLVFASQVVVQTEGRVCESQSHGFKGACTGDHNCALVCRNEGFSGGNCRGFRRRCFCTKIC | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium2982g00001 | 75 | Gene3D | - | 29 | 75 | IPR036574 | - | |
| Vium2982g00001 | 75 | SUPERFAMILY | Scorpion toxin-like | 29 | 75 | IPR036574 | - | |
| Vium2982g00001 | 75 | PANTHER | DEFENSIN-LIKE PROTEIN 1 | 3 | 75 | - | - | |
| Vium2982g00001 | 75 | SMART | gth_4 | 30 | 75 | IPR003614 | GO:0006952 | |
| Vium2982g00001 | 75 | Pfam | Gamma-thionin family | 29 | 75 | - | - | |
| Vium2982g00001 | 75 | ProSitePatterns | Gamma-thionins family signature. | 29 | 52 | IPR008176 | GO:0006952 | |
| Vium2982g00001 | 75 | CDD | Knot1 | 40 | 72 | IPR003614 | GO:0006952 | |
| Vium2982g00001 | 75 | PRINTS | Purothionin signature | 60 | 74 | IPR008176 | GO:0006952 | |
| Vium2982g00001 | 75 | PRINTS | Purothionin signature | 30 | 45 | IPR008176 | GO:0006952 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium2982g00001 | Vium-Chr2982 | 7880 | 8533 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium2982g00001 | 11 | 75 | Plant Defensins Gene Families | AT5G63660 | 63.077 | 1.60e-27 | 93.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium2982g00001 | - | - | gmx:547938 | 119.398 |