Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2974g00017 ATGGAGGACGAGGTGGATTCCCCTGTTGGTGTTCTTGAGGATTATTTTTTCAAGAGTTCAGAATCAGAAACTAGTTCTTCCAAAGAACCTGGTACCTCGGATTCTGATAAGTCAAAGCTCGGTTCTAGGTGGCATGCGTTTCTTCAATTGTTGAGGGTCAAATCGAAGAAGCCGGTGGCCACATTGTATCCTCTGACTGTCCTCAAACTCTCCAGAAGATTCACCAGTGGCAGGAGGGAGACTGTGATAGATGCTTCTTCCTTTCATAGTTCACCCTGGAAGATCTTCACTCACCATGAGATACAAATTGCAACCAATTACTTCTCCCAAGAAAATTGTATTGGAAAAGGTGGTTATGCCGAGGTTTACAAAGGGTGTTTGCCAAATGGTCAGCTGGTGGCGATTAAACGATTGGCACGTGGAGCAGAAAACGAAACTACAGAGGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCATCCCAATACTGCTAAATTAGTTGGCTATGGAGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAGTGCTGAATGGTTCCAAGGAGAAGCTACCATGGCCTGTCAGGCAGAAAATAGCATTAGGAACAGCCAAGGGTATATTGTATCTTCACGAAGGTTGTCAAAGAAGAATTATTCACAGAGATATAAAAGCATCAAATATCTTGCTTACTGAGGACTTTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACCCACCACACCGTTTCAAAAATCGAAGGGACTTTTGGTTACCTTGCTCCAGAATACTTGCTTCATGGGATAGTGGATGAGAAAACAGATGTGTTTGCCTTTGGTGTAGTGCTATTAGAATTAGTCACTGGACGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAGAACCTTTTCTGAAAAAGAATAATATCAGGGAGCTGATCGATCCTTCACTTGATGATGTTTTTGACAGTCGGCAGATTAAAATTATGGTTTTCACAGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGCCCCTCTATGAACCAGGTTGTACAGCTTCTGAATGGTAACGTTAGCTGCTCTAGCTTCACCAAGAAATCTCAACTTCCATTCACTCGAAAGGACTTTCTAGAAGAGTTCATTGATTCTGATTAA 1212 0.4241 MEDEVDSPVGVLEDYFFKSSESETSSSKEPGTSDSDKSKLGSRWHAFLQLLRVKSKKPVATLYPLTVLKLSRRFTSGRRETVIDASSFHSSPWKIFTHHEIQIATNYFSQENCIGKGGYAEVYKGCLPNGQLVAIKRLARGAENETTEDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWPVRQKIALGTAKGILYLHEGCQRRIIHRDIKASNILLTEDFEPQICDFGLAKWLPENWTHHTVSKIEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAEPFLKKNNIRELIDPSLDDVFDSRQIKIMVFTASLCIQQSSIRRPSMNQVVQLLNGNVSCSSFTKKSQLPFTRKDFLEEFIDSD 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2974g00017 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vium2974g00017 403 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Vium2974g00017 403 Gene3D Phosphorylase Kinase; domain 1 69 182 - -
Vium2974g00017 403 Pfam Protein kinase domain 109 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2974g00017 403 Gene3D Transferase(Phosphotransferase) domain 1 185 389 - -
Vium2974g00017 403 ProSiteProfiles Protein kinase domain profile. 108 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2974g00017 403 SMART serkin_6 108 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2974g00017 403 MobiDBLite consensus disorder prediction 16 39 - -
Vium2974g00017 403 PANTHER OS08G0249100 PROTEIN 6 396 IPR046958 -
Vium2974g00017 403 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 78 182 - -
Vium2974g00017 403 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 185 387 - -
Vium2974g00017 403 SUPERFAMILY Protein kinase-like (PK-like) 88 373 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2974g00017 Vium-Chr2974 105544 108773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2974g00017 96 375 Receptor kinase-like Gene Family AT1G53420 43.056 1.79e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium2974g00017 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2974g00017 - - gmx:100818913 672.544