Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2974g00013 ATGTCCCTTCCCTTTTATTTCTCCCTATGTTTTATTTTTTCTCTTTCATTTATTCTTCCGCCTCCTTCTCTGGCCGCCAACGACACCGTTCCCTGTCCCTTGAACATCACGGTGCTCCGCGTGGTGGGCGGCGGCGCCCGTCCCTCCTTCGACTCCGGCACTCAGTGCCATTACATCTTGCAGGCCCTCCACCTCCTCCAGGCGGACTACCTCCGCCGCAGCAACCTCTTCGTGCCGCCGCTCAACGCCTCCGAGTCCTGCTGGACCTCCTTCCAGTCCTTCATCAACGAATTCGACCCGAGCATCGATATCCGCTCCTCCTGCGGCCTCAAAACCGAGTGGATCTCCCAGGGCTGCATGAACATCACCACAAAACAGCAGTTCGAAGCCACCGTCCCCACCGCCGCAATCCAGGCCGTCCAAGGCAACTGCAACCAGTCCCTCGATAACAACTCCCCCTGCGCCCTCTGCACCACCAAAATCTCAACCCTTCTCTCCTACTTGATCGGCCGAACCGTCGGGAACGTCTCCGATTGCCGAGCCTATACTTCCATCTACGCCGCCTCTCTCTCTGACCAGTATGGTGCCACTGACCCCGGAACCGCCAAGTGCCTCTTCGGCCTCGATTTTTCCTCCCCCGGTTCCAGCGGTAAGCGCCGAACCATCATTATCGTCGTTTCCGTTTTCTGTTTTGTGGCTTTGCTTGTTCTTGCTGGGGTTTGGACTTACATTAGATTCAAGAAGAGGAACGAGTTTGGGGGAGGGAAGGGTGTTGGAAAATCTGAACTTGGTTTGGGTTTGGGTTCTGGGTTGGATTCCATGAACCAGAGTACGACTTTGATTAGGTTCACTTTTGATGAGATTAAGAAGGCTACTAGGAACTTCTCCAGGGATAACATGATCGGGAGTGGGGGTTATGGGAACGTTTACAAAGGAATGTTGCTGGATGGTAGTCCAGTTGCTTTTAAAAGGTTCAAGAATTGTTCTGTTGCCGGGGATGCTAGCTTCACTCACGAAGTTGAGGTTATTGCGAGTGTTCGCCATGTGAACCTTGTTACCTTAAGAGGTTATTGTACTGCCACCACCAATTTAGAGGGGCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGTCTTTACGATCATTTATTTGGTTCTTCCAAGAAGAATCTCAGTTGGTCTATTCGTCAAAAGATTGCTCTGGGGACCGCTAGAGGGTTGGCTTATTTGCATTACGGGGCTCAACCTTCCATCATTCATAGAGATATTAAAGCTAGTAACATACTTCTGGACCATAAGTTTGAGGCCAAGGTGGCGGATTTCGGGTTGGCGAAGTTCAACCCAGAGGGAATGACGCATATGAGCACTAGAGTGGCTGGGACTATGGGTTATGTTGCTCCTGAGTATGCCTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTATGGTGTGGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACGAACGATGATGGGCAACCCTCCGCACTCACTGACTTTGCTTGGTCTTTGGTTAGAAACGGTAGTGCTCTGGATGTTGTTGAAGATGGCATTCCAGAGCCAGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGTTGTGTTCTCATCCACAGCTATATGCTAGACCAACAATGGACCAGGTTGTTAAAATGCTGGAGACAGATGAATCGGTTCCTTCGTTAATGGATAGGCCAATTCCTTTTATTGCTGGGAGGATTGACATTGAAAAATCTGCTCTCAGTAACTCGGGTCAGCTCTGCAGTCCAACCGGTTATCAAGCTTATACATTACAAAATCAACGCAAATCTATTTGTAAAGAAGATGAGGAAGAAGAAGAAGGAAGTTCAGTGGCTGATACTGTTACCACAGAATGA 1926 0.4922 MSLPFYFSLCFIFSLSFILPPPSLAANDTVPCPLNITVLRVVGGGARPSFDSGTQCHYILQALHLLQADYLRRSNLFVPPLNASESCWTSFQSFINEFDPSIDIRSSCGLKTEWISQGCMNITTKQQFEATVPTAAIQAVQGNCNQSLDNNSPCALCTTKISTLLSYLIGRTVGNVSDCRAYTSIYAASLSDQYGATDPGTAKCLFGLDFSSPGSSGKRRTIIIVVSVFCFVALLVLAGVWTYIRFKKRNEFGGGKGVGKSELGLGLGSGLDSMNQSTTLIRFTFDEIKKATRNFSRDNMIGSGGYGNVYKGMLLDGSPVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKNLSWSIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGKKALQTNDDGQPSALTDFAWSLVRNGSALDVVEDGIPEPGPPEVLEKYVLIAVLCSHPQLYARPTMDQVVKMLETDESVPSLMDRPIPFIAGRIDIEKSALSNSGQLCSPTGYQAYTLQNQRKSICKEDEEEEEGSSVADTVTTE 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2974g00013 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Vium2974g00013 641 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vium2974g00013 641 MobiDBLite consensus disorder prediction 618 641 - -
Vium2974g00013 641 Pfam SPARK 28 179 IPR043891 -
Vium2974g00013 641 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 260 374 - -
Vium2974g00013 641 Gene3D Phosphorylase Kinase; domain 1 269 374 - -
Vium2974g00013 641 ProSiteProfiles Protein kinase domain profile. 295 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2974g00013 641 Gene3D Transferase(Phosphotransferase) domain 1 376 578 - -
Vium2974g00013 641 SMART serkin_6 295 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2974g00013 641 CDD STKc_IRAK 301 570 - -
Vium2974g00013 641 Pfam Protein kinase domain 296 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2974g00013 641 SUPERFAMILY Protein kinase-like (PK-like) 277 578 IPR011009 -
Vium2974g00013 641 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 376 577 - -
Vium2974g00013 641 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 145 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2974g00013 Vium-Chr2974 93230 95618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2974g00013 17 614 Receptor kinase-like Gene Family AT2G48010 61.028 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vium2974g00013 Pkinase 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2974g00013 - - gmx:100819453 1083.94