Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2974g00012 ATGCCACTGTTCTGGATCCTTGTCACCGTCTTCCTCACTCTCCCTGCGCTTTCCCTCTCCGATTCCTGTCCTCTCAACTTCGACCTCGTCCTTTCGAGACCCTCATCGGACTCCAAGACACGGTGTCTTTACATGCGCCAATCCCTTCGTATTCTTCAATCCGATTACCTCCACCGCACCGGTCTCTTCCCTCCTTCCAACGCCTCCTTCTCCTGCTGGACCGCTCTCCAAAATCACACCCACCAATACGACATTCGTTCCTCCTGCAACCTCCCTTCCTCTTCTTTTTCCCTCTCCTGCAACAACATCACCAACCGATCCCAATTCGAGCACCTTTTGCCTCTCTCAGCTCTTGAACCCATACGGAATACTTGTAACCATTCTCTCAACAGTTTCGCAGCTTGTGCTCTCTGCACCAAAGCTTTGTCCAACTTGGACTCCCATCTCACGGACAATACCACTGATTGCAAGATTATTCCTTCTATATATGCTGCTTCCTTCTCCAACCTGCAAGACCCCAGCACTGCTGATTGTCTGTTCAACTTTGGTTTTCCTTCTTCAGTTTCAACTGGTAAGCGTCGAAACATTCTTGTTGCGGCTTTTTGTGTTCTGGCCTTCTTCTTGTTGGTCTTTGGTGTTTTTTGGGCTTACTTTAGATTGAAGAAAAAGAAGAAGAAGAAGGATATTTGTAAAACTGAGATGGGTTTGGGTTCTGGGTTGGATTCTATGAACCAGACTACTACTTTGATTAGGTTCACTTTTGATGAGATTAAAAAGGCTACTAGGAATTTCGCCGGTGATAACATAATTGGGAAGGGGGCTTATGGGAATGTTTACAGAGGGACGCTGGTTGATGGGACTCAGGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATCCTAGCTTCACTCATGAAGTTGAGGTTATTGCGAGCGTTAGGCATGTGAACCTTGTTGGCTTAAGAGGGTATTGTACTGCTACAACTAATTTAGAGGGTCACCAGAGGATTATTGTCACTGATTTGATGGAGAATGGGAGCGTTTATGATCATTTATTTGGTTCTGCTAAGCAGAAACTCAGTTGGCCAATTCGTCAAAAGATTGCTCTAGGCACTGCTAGGGGGTTGGCTTATTTGCACTATGGGGCCCAACCTTCCATCATCCATAGGGATATTAAAGCTAGTAACATACTTCTGGACCTCAAATTTGAAGCCAAGGTAGCAGATTTTGGGTTAGCGAAGTTCAAACCTGAGGGAATGACCCATATGAGCACTAGAGTGGCTGGAACCATGGGGTATGTCGCACCTGAGTATGCTTTGTATGGACAGTTGACTGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAGGGCTCTTGAAATTGACACTGATGGGCAACCCTCTGCAGTCACTGACTTTGCTTGGTCATTGGTTAGGAATGGTAGAGCTTTGGATGTTATTGAAGATGGTATGCCAGAACTTGGTCCAATAGAAATTCTTGAGAAGCATGTATTGGTTGCTATACTATGTTGTCATCCTCAACTATATGCTAGGCCAACAATGGACCAGGTTGTTAAAATGCTAGAGACGGAGGAATTAGTGTCCTCATTCTCTTGTATTGCTGGGAGGATTGATACTGAGAAATCTGTGGAATAA 1686 0.4508 MPLFWILVTVFLTLPALSLSDSCPLNFDLVLSRPSSDSKTRCLYMRQSLRILQSDYLHRTGLFPPSNASFSCWTALQNHTHQYDIRSSCNLPSSSFSLSCNNITNRSQFEHLLPLSALEPIRNTCNHSLNSFAACALCTKALSNLDSHLTDNTTDCKIIPSIYAASFSNLQDPSTADCLFNFGFPSSVSTGKRRNILVAAFCVLAFFLLVFGVFWAYFRLKKKKKKKDICKTEMGLGSGLDSMNQTTTLIRFTFDEIKKATRNFAGDNIIGKGAYGNVYRGTLVDGTQVALKRFKNCSVAGDPSFTHEVEVIASVRHVNLVGLRGYCTATTNLEGHQRIIVTDLMENGSVYDHLFGSAKQKLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDLKFEAKVADFGLAKFKPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKRALEIDTDGQPSAVTDFAWSLVRNGRALDVIEDGMPELGPIEILEKHVLVAILCCHPQLYARPTMDQVVKMLETEELVSSFSCIAGRIDTEKSVE 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2974g00012 561 SMART serkin_6 264 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2974g00012 561 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Vium2974g00012 561 CDD STKc_IRAK 270 539 - -
Vium2974g00012 561 PANTHER OS01G0750732 PROTEIN 87 540 - -
Vium2974g00012 561 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 224 343 - -
Vium2974g00012 561 SUPERFAMILY Protein kinase-like (PK-like) 241 539 IPR011009 -
Vium2974g00012 561 Pfam Protein tyrosine and serine/threonine kinase 268 538 IPR001245 GO:0004672|GO:0006468
Vium2974g00012 561 Pfam SPARK 20 152 IPR043891 -
Vium2974g00012 561 Gene3D Phosphorylase Kinase; domain 1 227 343 - -
Vium2974g00012 561 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 345 546 - -
Vium2974g00012 561 ProSiteProfiles Protein kinase domain profile. 264 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2974g00012 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Vium2974g00012 561 Gene3D Transferase(Phosphotransferase) domain 1 345 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2974g00012 Vium-Chr2974 76808 79245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2974g00012 7 543 Receptor kinase-like Gene Family AT2G48010 58.633 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vium2974g00012 PK_Tyr_Ser-Thr 6.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2974g00012 - - vun:114194863 943.34