Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2972g00004 ATGGGGATGAAGAGCACTGGGGGAGAGATTGTTCAGGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGTAAGGTTTACACTGCAAAGGGTCCTCGTGATCGCAGGGTTAGGCTCTCAGCGCACACGGCAATTCAGTTCTACGATGTTCAGGATCGTTTAGGGTATGACAGACCGAGCAAGGCCGTGGACTGGCTCATAAAGAAGGCCAAGAATGCCATTGACAAGCTCGCTGAGCTTCCTCCGTGGCACCCTACTGCCAACGCTGCAGATGCAGAGAACAACCATACCAATGCAGGGTCTAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAACGGCAATTAGGTGAGGACCATGATAACCACCATTCAGTTTTCATCCCTGCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCCACCTCCTCCATCAATTTCCCAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCTCTCCACTCCTTCCAAGACCCTGGCCTGATTCATGGCCAGTCCCAAGCAGATGCAAACCAAACACAAACACCTTCCAATCACCAAGCCCTCTTTTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTCTGACTTGGAACAGTGATGCAGGCACGGATATGAACAGAACTGGGTTCATGGTCAACTCATCAGCGCTTCTAGGCCAAGGTGTTTCTGCTGCATATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCCATGGCTTCTTCCTCAGAACATCACAAGTCACAGCCAATTCAACAGGCTTCCATCTTTGGCAGCAGGTTTCTGTCTGATGCATTGCCAGGGTTCTGCATCCCAGCTAGAATTCAAGGCGAGGATGGGAGCCACGGTGTAGGTCCCGACAAGACATCATCTTCTTCTCCTAATTCTCATCATCGAACACAAACGTGA 1044 0.5 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPTANAADAENNHTNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHSVFIPAPIDTDAIAFFPTTTATSSINFPTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHGQSQADANQTQTPSNHQALFSGSTQVGFEANYPRILTWNSDAGTDMNRTGFMVNSSALLGQGVSAAYSQRGTLQSSFSPSLRPWSDIPMASSSEHHKSQPIQQASIFGSRFLSDALPGFCIPARIQGEDGSHGVGPDKTSSSSPNSHHRTQT 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2972g00004 347 Pfam TCP family transcription factor 23 125 IPR017887 -
Vium2972g00004 347 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Vium2972g00004 347 MobiDBLite consensus disorder prediction 330 347 - -
Vium2972g00004 347 MobiDBLite consensus disorder prediction 271 296 - -
Vium2972g00004 347 MobiDBLite consensus disorder prediction 318 347 - -
Vium2972g00004 347 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 283 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2972g00004 Vium-Chr2972 50269 53138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2972g00004 8 343 TCP Transcription Factor Family AT3G15030 42.928 1.63e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium2972g00004 TCP 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2972g00004 - - pvu:PHAVU_005G097200g 637.491