Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2972g00002 ATGAGTTACTTCGACAACGATCACGACCGCAGTCCGTTTTTCCAGAACCACAATGACTTCAACCGGAGGATACTAATCACCGCCATAGTTTCCCTATCAGTCGTGCTAGTTTTAGTGTTTGCTCTTCACATCTACGCAAGGTTTTTTCTGCGCCGTCAAACTCGCCGCCGAAGCACCATATACCAACTCAGTCTCAACGTGGCTCACGCGCAAGCCCAACCGCCAATCGCCGGCCTCGACCCTGCAGTCATCACCGCTCTCCCCACCTTCCCCTTCAAACAACAGAACGACGCCGTTGAGTGCGCCGTCTGCTTGAGCGTTCTCGAAGACGGAGAACATGTCAGACTCCTTCCTAATTGCAAGCATAGCTTCCACGTCGGCTGCATCGACAAGTGGCTCGCCTCACACTCCACGTGTCCCATTTGTCGATCCAAAGCGGAACCGCTCCGACTTGAACCGGTCCAGCGCGAGGATCCCACCCGGTTGGCTCTTCCCACCGCCCCGGTATTGTTCGAAAACGTGGAAGGAACGTCCGACGGTGGTAATGGGTCGCCTAAAATCAACGGCTCCAATTCTAGGTTGAGTTCATTTCGAAGAATTCTCAGCAGAGAGAGATCGTTGAGGAGACTCCAACCTTCTGCGCATGATGATGTTGAACAGGACTTAGAGAGACAGTGA 678 0.5339 MSYFDNDHDRSPFFQNHNDFNRRILITAIVSLSVVLVLVFALHIYARFFLRRQTRRRSTIYQLSLNVAHAQAQPPIAGLDPAVITALPTFPFKQQNDAVECAVCLSVLEDGEHVRLLPNCKHSFHVGCIDKWLASHSTCPICRSKAEPLRLEPVQREDPTRLALPTAPVLFENVEGTSDGGNGSPKINGSNSRLSSFRRILSRERSLRRLQPSAHDDVEQDLERQ 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2972g00002 225 Pfam Ring finger domain 100 143 IPR001841 -
Vium2972g00002 225 CDD RING-H2_EL5-like 100 143 - -
Vium2972g00002 225 SUPERFAMILY RING/U-box 94 147 - -
Vium2972g00002 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 148 IPR013083 -
Vium2972g00002 225 SMART ring_2 101 142 IPR001841 -
Vium2972g00002 225 FunFam E3 ubiquitin-protein ligase ATL6 67 148 - -
Vium2972g00002 225 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vium2972g00002 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2972g00002 Vium-Chr2972 34179 35113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2972g00002 1 225 C3H Transcription Factor Family AT2G42360 44.262 4.99e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2972g00002 K19038 - gmx:100780265 293.893