Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2968g00032 ATGCTTATGAAGCTTAAGGACCCAGAAAAGGGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAACTTGCAAAAAGAAAAAAATTTGGAATTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCCACACCACTGCGATTGCGGTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTGGAGTATCTTGTCCTGGATGAATCGGATAAGCTGTTTGAACCCGAATTATTCAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCCTCAATCATTCGCTCGCTTTTTAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGAAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGTTGTACGGTGAACTTGAATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTGAACAAGAGCGAGGAAATGCTGTCGACAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGAGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATACGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGAAGGAGTGGAGAAGCTATTACGTTGTACACAGAGGAAGACATTCCATTGTTGCGAAATGTTGCTAATCTAATGGCAGCATCGGGCTGTGAAGTTCCGCCCTGGCTCATGGAGTTGCAAAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTATAA 1011 0.4105 MLMKLKDPEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFGIKLMTKNLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELEFDNIRVDVIHSDLSEQERGNAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRSGEAITLYTEEDIPLLRNVANLMAASGCEVPPWLMELQKKKWKKHRPKRDSISTKPDL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2968g00032 336 SMART helicmild6 196 277 IPR001650 -
Vium2968g00032 336 Pfam DEAD/DEAH box helicase 8 131 IPR011545 GO:0003676|GO:0005524
Vium2968g00032 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 295 IPR027417 -
Vium2968g00032 336 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 155 316 IPR001650 -
Vium2968g00032 336 Gene3D - 1 143 IPR027417 -
Vium2968g00032 336 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 144 IPR014001 -
Vium2968g00032 336 CDD SF2_C_DEAD 156 286 - -
Vium2968g00032 336 Gene3D - 144 321 IPR027417 -
Vium2968g00032 336 SMART ultradead3 1 159 IPR014001 -
Vium2968g00032 336 Pfam Helicase conserved C-terminal domain 173 277 IPR001650 -
Vium2968g00032 336 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2968g00032 Vium-Chr2968 179423 182574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2968g00032 13 315 Eukaryotic Initiation Factors Gene Family AT3G19760 30.164 2.69e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2968g00032 K14779 - gmx:100800969 605.134