Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2968g00026 ATGCACGGAACACCAGAAGAAGAGACGGTGCAGAGGATCGGATGCGTATCCGTGGACCCATTCGGGTTAATGGAAGTACTCGACTTTTACTTTCCTGAACAGCTCTTCACCGTCGAGAAAACCTGGAACAATCTCGCTTCCTCTCTTTTTTCATTCTTTTCTTCACTGGTGGGACAAAACCTTGTTTCTCAGGTGAAAAGTGGTTATGGAAACAATACCTTGTCGCTTGACTTTCAGCAGTTCCAACAGATTTATCATGATGAGGAATTTTATAAAATGTTAGAGGAGAAACCTAAAATTGCTCTCACATGCATGAATGCTGCTGTACATAAGGTTTTGCTTTCCAACTGGGAGAATCACAATCTGGTGCTTGGTGCAAAGGTTGATGTTCGTCTTCATAACTGTCCTAAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTGGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCGCTGGTGGTGCAAATGTTTTTTGAATGCTGTAAATGTAGACAAACAATTTCACGCATATTTCCCGATGGAAAGTATTCTCCACCATCAACTTGCAATTTGAACGGCTGCAAGAGCAAAATCTTTAATCCGTTGCGGTCTACTGCTCAAACCATTGATTTCCAAAAAATAAGAGTTCAAGAGTTATTAAAACATGAAGACCATGAAGAAGGACGGGTACCTCGAACAGTGGAATGCGAGCTTAGCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTTACTGTTACTGGAATTATAAGAGGAATTAACAATTACATGGATATTGGAGGAGGGAAGTCAAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCCACATCTCAGGATCTGCAGGACTCTAATGCCAAAACTAGGCCAGCTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGCAAAGTTTAAACGGGAACACGGTTCAGATTTATTTCGCCAAATCCTTCAATCTATATGCCCATCCATCTATGGGCATGAGCTTGTTAAAGCTGGTATAACTCTGTCATTATTTGGTGGTGTGCGGAAGCATTCTATGGATCAGAACAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCTGCTGCAGCAGTTTCTCCGCGTGGCATCTATGTCTGTGGTAATGCCACAACAAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAAGCAGGTGCTATGGTGTTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCTTCAGAGCATCAGGCTTTACTGGAAGCGATGGAGCAACAGTGTGTATCTATCGCAAAGGCGGGGTTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCTGCTGCAAATCCCGCTGGTGGTCATTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATAAGTGCTGCTCTCCTGTCTCGTTTTGATTTAATTTTCATACTGCTGGACAAACCCGATGAACTTCTGGACAAGCGACTCTCGGACCACATTATGGCACTTCATGGTGGGAATGGACAACTTTCACCAGCACTGAAAAAGCGACGTGGAGATACATCTGATTCCAGAGCTACTGTATCACAGAATGCGGAACCTGTAGGAGACTTGGATGTTAGATCTAGATCTGGATCTTTAATTTCAAGATTGAGACTTGACCCACTAAGAGACGGTGATTTTATTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCGAGGAGTTATGTCTTTCCCAGTTCCATTTGGACCAAATCTTGTTCAAATAATGCAAGACTTTTTCTCACTTTCAAATCAAGATTCGTGTCCAATCAAGTTGACGACTGTAGTGAAAGACGAAGGAGCATGGAGAACCACATTATTCTGCCTCTCGAATTGATCAAAGAAGTTCTGCCTTTGCTGGATGACAAAGTCAGCTGCAGAAATTTTGCAAAAGTTTTACCTAAAACTGAGGGATCATAA 2136 0.4167 MHGTPEEETVQRIGCVSVDPFGLMEVLDFYFPEQLFTVEKTWNNLASSLFSFFSSLVGQNLVSQVKSGYGNNTLSLDFQQFQQIYHDEEFYKMLEEKPKIALTCMNAAVHKVLLSNWENHNLVLGAKVDVRLHNCPKTMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVQMFFECCKCRQTISRIFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELSQDLVDACIPGDVVTVTGIIRGINNYMDIGGGKSKNRNQGFYYLYLEAVSIKNSKSQSTSQDLQDSNAKTRPAELFDLFSFSSKDLEFVAKFKREHGSDLFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKISAALLSRFDLIFILLDKPDELLDKRLSDHIMALHGGNGQLSPALKKRRGDTSDSRATVSQNAEPVGDLDVRSRSGSLISRLRLDPLRDGDFIPLPGQLLRKYIAYARSYVFPSSIWTKSCSNNARLFLTFKSRFVSNQVDDCSERRRSMENHIILPLELIKEVLPLLDDKVSCRNFAKVLPKTEGS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2968g00026 711 Coils Coil 463 483 - -
Vium2968g00026 711 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00026 711 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00026 711 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00026 711 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00026 711 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00026 711 SMART AAA_5 392 544 IPR003593 GO:0016887
Vium2968g00026 711 ProSiteProfiles MCM family domain profile. 348 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00026 711 Pfam MCM P-loop domain 345 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00026 711 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 60 638 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vium2968g00026 711 SMART mcm 138 690 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vium2968g00026 711 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Vium2968g00026 711 FunFam Retrovirus-related Pol polyprotein LINE-1 327 480 - -
Vium2968g00026 711 Pfam MCM OB domain 142 270 IPR033762 -
Vium2968g00026 711 SUPERFAMILY Nucleic acid-binding proteins 69 272 IPR012340 -
Vium2968g00026 711 Gene3D - 169 219 - -
Vium2968g00026 711 Gene3D - 142 271 IPR012340 -
Vium2968g00026 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 560 IPR027417 -
Vium2968g00026 711 MobiDBLite consensus disorder prediction 566 590 - -
Vium2968g00026 711 Gene3D - 326 658 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2968g00026 Vium-Chr2968 153537 165666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2968g00026 18 637 Core DNA Replication Machinery Family AT3G09660 67.524 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2968g00026 K10737 - gmx:100784549 1051.58