Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2968g00025 ATGCACGGAACACCAGAAGAAGAGACGGTGCAGAGGATCGGATGCGTATCCGTGGACCCATTCGGGTTAATGGAAGTACTCGACTTTTACTTTCCTGAACAGCTCTTCACCGTCGAGAAAACCTGGAACAATCTCGCTTCCTCTCTTTTTTCATTCTTTTCTTCACTGGTGGGACAAAACCTTGTTTCTCAGGTGAAAAGTGGTTATGGAAACAATACCTTGTCGCTTGACTTTCAGCAGTTCCAACAGATTTATCATGATGAGGAATTTTATAAAATGTTAGAGGAGAAACCTAAAATTGCTCTCACATGCATGAATGCTGCTGTACATAAGGTTTTGCTTTCCAACTGGGAGAATCACAATCTGGTGCTTGGTGCAAAGGTTGATGTTCGTCTTCATAACTGTCCTAAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTGGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCGCTGGTGGTGCAAATGTTTTTTGAATGCTGTAAATGTAGACAAACAATTTCACGCATATTTCCCGATGGAAAGTATTCTCCACCATCAACTTGCAATTTGAACGGCTGCAAGAGCAAAATCTTTAATCCGTTGCGGTCTACTGCTCAAACCATTGATTTCCAAAAAATAAGAGTTCAAGAGTTATTAAAACATGAAGACCATGAAGAAGGACGGGTACCTCGAACAGTGGAATGCGAGCTTAGCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTTACTGTTACTGGAATTATAAGAGGAATTAACAATTACATGGATATTGGAGGAGGGAAGTCAAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCCACATCTCAGGATCTGCAGGACTCTAATGCCAAAACTAGGCCAGCTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGCAAAGTTTAAACGGGAACACGGTTCAGATTTATTTCGCCAAATCCTTCAATCTATATGCCCATCCATCTATGGGCATGAGCTTGTTAAAGCTGGTATAACTCTGTCATTATTTGGTGGTGTGCGGAAGCATTCTATGGATCAGAACAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCTGCTGCAGCAGTTTCTCCGCGTGGCATCTATGTCTGTGGTAATGCCACAACAAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAAGCAGGTGCTATGGTGTTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCTTCAGAGCATCAGGCTTTACTGGAAGCGATGGAGCAACAGTGTGTATCTATCGCAAAGGCGGGGTTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCTGCTGCAAATCCCGCTGGTGGTCATTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATAAGTGCTGCTCTCCTGTCTCGTTTTGATTTAATTTTCATACTGCTGGACAAACCCGATGAACTTCTGGACAAGCGACTCTCGGACCACATTATGGCACTTCATGGTGGGAATGGACAACTTTCACCAGCACTGAAAAAGCGACGTGGAGATACATCTGATTCCAGAGCTACTGTATCACAGAATGCGGAACCTGTAGGAGACTTGGATGTTAGATCTAGATCTGGATCTTTAATTTCAAGATTGAGACTTGACCCACTAAGAGACGGTGATTTTATTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCGAGGAGTTATGTCTTTCCCAGGATGACAAAGTCAGCTGCAGAAATTTTGCAAAAGTTTTACCTAAAACTGAGGGATCATAATACTTCGGCTGACGGTACTCCTATAACTGCTAGGCAGCTGGAAAGTCTAGTACGGCTAGCTGAAGCTCGGGCTCGGCTGGACTTGAGAGTAGAAATAACGGACCAGGATGCAACGGATGTTGTTGAAATCATGAAAGAGTCCCTGTATGATAAATATGTTGATGAGCATGGAATCGTGGATTTTGGTCGAAGTAGTGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCACTCAATAAGCAATCGGAATTGGAACAGAAGGATTGCTTTTCAGTATCTGAACTATACAGCCTTGCAGATAGGATTTCCTTGAAAGTACCTGATATTGACACTTTCATCGAAAACTTAAACAGTGTTAGTTATCTACTCAAAAAAGGACCAAAGACATACCAGGTATTATCCTCTTCTTATGCACGAAGCCAAGCGTTTAAGACAAGGGGTTAA 2424 0.4187 MHGTPEEETVQRIGCVSVDPFGLMEVLDFYFPEQLFTVEKTWNNLASSLFSFFSSLVGQNLVSQVKSGYGNNTLSLDFQQFQQIYHDEEFYKMLEEKPKIALTCMNAAVHKVLLSNWENHNLVLGAKVDVRLHNCPKTMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVQMFFECCKCRQTISRIFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELSQDLVDACIPGDVVTVTGIIRGINNYMDIGGGKSKNRNQGFYYLYLEAVSIKNSKSQSTSQDLQDSNAKTRPAELFDLFSFSSKDLEFVAKFKREHGSDLFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKISAALLSRFDLIFILLDKPDELLDKRLSDHIMALHGGNGQLSPALKKRRGDTSDSRATVSQNAEPVGDLDVRSRSGSLISRLRLDPLRDGDFIPLPGQLLRKYIAYARSYVFPRMTKSAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITDQDATDVVEIMKESLYDKYVDEHGIVDFGRSSGMSQQKEAKRFLNALNKQSELEQKDCFSVSELYSLADRISLKVPDIDTFIENLNSVSYLLKKGPKTYQVLSSSYARSQAFKTRG 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2968g00025 807 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Vium2968g00025 807 Coils Coil 463 483 - -
Vium2968g00025 807 CDD MCM8 352 705 - -
Vium2968g00025 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 712 IPR027417 -
Vium2968g00025 807 Pfam MCM P-loop domain 345 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00025 807 SMART AAA_5 392 544 IPR003593 GO:0016887
Vium2968g00025 807 Pfam MCM OB domain 142 270 IPR033762 -
Vium2968g00025 807 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 60 744 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vium2968g00025 807 Gene3D - 169 219 - -
Vium2968g00025 807 Gene3D - 142 271 IPR012340 -
Vium2968g00025 807 ProSiteProfiles MCM family domain profile. 348 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00025 807 SMART mcm 138 707 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vium2968g00025 807 Gene3D - 326 715 IPR027417 -
Vium2968g00025 807 CDD MCM8_WHD 728 793 - -
Vium2968g00025 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00025 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00025 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00025 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00025 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium2968g00025 807 SUPERFAMILY Nucleic acid-binding proteins 69 272 IPR012340 -
Vium2968g00025 807 MobiDBLite consensus disorder prediction 566 590 - -
Vium2968g00025 807 Pfam MCM AAA-lid domain 623 706 IPR041562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2968g00025 Vium-Chr2968 151877 165666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2968g00025 18 793 Core DNA Replication Machinery Family AT3G09660 70.823 0.0 1135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2968g00025 K10737 - gmx:100784549 1345.87