Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2968g00019 ATGCTGGATCTTAACCTCAACGCCGATTCCCCCTCCGACAACAACCACACGCCTCCGCTCTCCGTCGCTCAAATGGAGAGCTCCGGAAGCTTCAATTCCTCCGTTGTCAATGCTGCCGACACCGATGACTCCTGCTCCTACGGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACAGCAACACCGCTTCCCCCTCCGCAGGAGAATCCTCTGTCCGCACCATCCAGCTCTTTCCGGCTGCCGACTCAGGAGTCTCGCCGACTTGGCTGGACTTCTCGACGAAGGTGGATCAGCACGGTGCCGCCTCGGAGCAGAGGATCACTCCGCGGCAGCCGCTGGTGAAGAAGAGCCGCCGTGGACCGAGGTCGCGGAGCTCGCAGTATCGCGGCGTCACTTTCTATCGCAGGACAGGAAGATGGGAATCTCACATTTGGGATTGTGGCAAACAAGTGTACTTAGGTGGATTTGACACGGCGCATGCTGCGGCAAGGGCTTATGATCGCGCTGCGATCAAGTTCCGCGGGGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGACGAGGATATAAAGCAGATGAGTAATTTCACGAAGGAGGAGTTTGTGCATATTCTGCGTCGACAGAGCACGGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGCGGGCGATGGGAAGCTCGTATGGGGCAGTTTTTGGGTAAAAAGGTTTATCGCTGTAGGTATATATATCTTGGGCTATTCGACAGCGAGTTAGAGGCTGCAAGAGCGTATGATAGGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGCATATACGAAGGGGAGGTGATTTCCCAATCTGATAATAATGAAGATGGCAAGCAAAATCTTGATCTTAACCTGGGCATAGCTCCCCCTTCTTACTCTGACTCTCAAATCAAGAACACACCCAGCAACGGAAGTGGTTTGAAAGGTCCACCCAGCTGGGATGATATCCCTGTCGAAAAGAGATTTATGTTTGAGCACTCTGGATCGAGATCACTGAATGTTCAGGCATCTCAAGGCATCTACAGAGTATCTGGGCATCATCCTTCCACATGGAATGGTAGCAATTTCTTTCCCATCTACGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGGTCCCATGCCTAATTGGGCATGGCAAGTCCAAGGTCCGTATGGCGGGCCAACTCTTACTCCACCGTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGATACTCAAATTCATTTTCCAAACATGACTTTCCTCCACTCACATTTTCCACCATCGATCACCAACTCGGGCACCGTATCCCCTTTCTTCATCGGTAGCTGA 1401 0.5132 MLDLNLNADSPSDNNHTPPLSVAQMESSGSFNSSVVNAADTDDSCSYGDAVAYNFAILNSNTASPSAGESSVRTIQLFPAADSGVSPTWLDFSTKVDQHGAASEQRITPRQPLVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKVYRCRYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSIYEGEVISQSDNNEDGKQNLDLNLGIAPPSYSDSQIKNTPSNGSGLKGPPSWDDIPVEKRFMFEHSGSRSLNVQASQGIYRVSGHHPSTWNGSNFFPIYEETAIEKRMEAGPMPNWAWQVQGPYGGPTLTPPFSTAASSGFPSTIIPSAADTQIHFPNMTFLHSHFPPSITNSGTVSPFFIGS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2968g00019 466 SUPERFAMILY DNA-binding domain 218 283 IPR016177 GO:0003677
Vium2968g00019 466 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 74 313 - -
Vium2968g00019 466 MobiDBLite consensus disorder prediction 314 334 - -
Vium2968g00019 466 MobiDBLite consensus disorder prediction 314 329 - -
Vium2968g00019 466 Pfam AP2 domain 218 273 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 Pfam AP2 domain 127 175 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 SMART rav1_2 219 287 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 SMART rav1_2 127 189 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 PRINTS Ethylene responsive element binding protein signature 220 231 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 PRINTS Ethylene responsive element binding protein signature 263 283 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 ProSiteProfiles AP2/ERF domain profile. 219 281 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 MobiDBLite consensus disorder prediction 1 26 - -
Vium2968g00019 466 MobiDBLite consensus disorder prediction 7 26 - -
Vium2968g00019 466 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Vium2968g00019 466 Gene3D AP2/ERF domain 126 185 IPR036955 GO:0003700|GO:0006355
Vium2968g00019 466 Gene3D AP2/ERF domain 218 282 IPR036955 GO:0003700|GO:0006355
Vium2968g00019 466 MobiDBLite consensus disorder prediction 100 127 - -
Vium2968g00019 466 ProSiteProfiles AP2/ERF domain profile. 127 183 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 CDD AP2 127 185 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 CDD AP2 218 283 IPR001471 GO:0003700|GO:0006355
Vium2968g00019 466 FunFam AP2-like ethylene-responsive transcription factor 126 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2968g00019 Vium-Chr2968 104510 107424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2968g00019 107 318 AP2-EREBP Transcription Factor Family AT4G36920 78.037 1.90e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vium2968g00019 AP2 5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2968g00019 K09284 - gmx:100808212 780.015