Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2968g00018 ATGGCGGCGGCAGCAGCAAGGCCTCTCGTCTCCGTTCAAACCCTAGAGGGCGATGCAGCCCCCACCGTCCCTCTTCCTGATGTCATGAAGGCTCCCATTCGCCCCGACATTGTCAATTTTGTCCACTCCAACATTTCTCGCAACAGCCGCCAGCCCTACGCCGTCAGCAAGCGCGCCGGCCACCAGACCTCCGCCGAGTCATGGGGCACGGGCCGTGCCGTGTCGCGTATCCCTCGCGTCCCCGGCGGCGGTACGCACCGTGCTGGCCAGGCCGCCTTCGGTAACATGTGCCGTGGCGGTCGTATGTTCGCGCCGACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTTCAGCAGAAACGCCACGCCGTGGTCTCTGCCATCGCTGCCTCCGCGATCCCCTCCCTTGTCCAGGCCCGTGGCCACCGCATCGAGTCTGTCCCTGAGCTTCCCCTCGTCGTCAGCGACAGCATCGAGAGTGTGGAGAAGTCCAAGGAGGCGGTGAAAATTCTTCAGAAGATCGGTGCGTTCCCCGACGCGGAGAAGGCGAAACTGAGTCACGGAATTCGTCCCGGTAAGGGAAAAATGAGGAACCGTAGGTACATTTCACGCAAGGGTCCTCTTATCGTTTATGGATCCGAAGGTGCTAAAGTTGTCAAAGCGTTCAGGAACATTCCCGGTGTTGAGTTGGCAAATGTGAACAGGCTTAACCTTCTGAAGCTTGCTCCCGGTGGCCACCTTGGGAGGTTTATTGTTTGGACCAAGTCAGCGTTTGAGAAATTGGACTCCATTTATGGGTCTTTCGACAAGGTCTTTGAGAAGAAAAAGGGCTACCTGCTTCCCCGCCCTAAGATGATTAACTCGGACTTGGCCCGCATCATTAATTCCGATGAAGTTCAGTCCGTGGTGAGGCCCATCAATAAGGAGGTTAAGCGCGCTACTCTGAAGAAGAACCCTCTGAAGAACCTCAATGTCATGTTGAAGCTGAATCCCTATGCTAAGACCGCTAAAAGGATGGCTCTTCTCGCTGAGAAGCAGCGTCTTGTTGCTAAGAAGGAAAAGCTTGATCAGAAACGCAATATTGTTTCCAAGGAGGAGGCTTCTGCTATCAGAGCTGCTGGAAAAGCGTGGTATCAAACAATGGTCTCAGACTCTGATTATACAGAATTTGACAACTTTTCTAAGTGGTTGGGTGTTTCCCAGTGA 1209 0.5467 MAAAAARPLVSVQTLEGDAAPTVPLPDVMKAPIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDSIESVEKSKEAVKILQKIGAFPDAEKAKLSHGIRPGKGKMRNRRYISRKGPLIVYGSEGAKVVKAFRNIPGVELANVNRLNLLKLAPGGHLGRFIVWTKSAFEKLDSIYGSFDKVFEKKKGYLLPRPKMINSDLARIINSDEVQSVVRPINKEVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEKQRLVAKKEKLDQKRNIVSKEEASAIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2968g00018 402 MobiDBLite consensus disorder prediction 52 70 - -
Vium2968g00018 402 Coils Coil 339 366 - -
Vium2968g00018 402 FunFam 60S ribosomal protein L4 4 305 - -
Vium2968g00018 402 Gene3D - 4 305 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vium2968g00018 402 SUPERFAMILY Ribosomal protein L4 9 264 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vium2968g00018 402 Pfam Ribosomal protein L4/L1 family 23 263 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vium2968g00018 402 ProSitePatterns Ribosomal protein L1e signature. 117 143 IPR013000 -
Vium2968g00018 402 MobiDBLite consensus disorder prediction 52 88 - -
Vium2968g00018 402 Pfam 60S ribosomal protein L4 C-terminal domain 277 348 IPR025755 -
Vium2968g00018 402 PANTHER 60S RIBOSOMAL PROTEIN L4 5 395 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2968g00018 Vium-Chr2968 87949 89732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2968g00018 1 402 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 79.557 0.0 665