Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2968g00017 ATGGCAATGGCGCCCTCAACTCCCTCTAGCGGCTCTGGCAAGAAGGTTAGAAAGCCTTATACCATCACCAAGTCTAGGGAGAGCTGGTCTGAGGAGGAGCATGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAGGATTTTGTTGGTTCAAAGACAGTTATTCAGATTAGAAGTCACGCCCAGAAGTACTTTCTGAAAGTTCAGAAGAACGGGACCGTAGCACATGTTCCTCCTCCTCGTCCTAAGCGTAAAGCTGTTCATCCATACCCACAAAAGGAATCCAAAAATGTTTTGGTGCCATTTCCAGCTTCCCTGGCATATGTTTCTCCCACGTGGGATGAAAGTTTCTTGCTCATGAGTTCTGGATCCAACAGATCACTGCCCTATCAGGATGAACTCACCAATCTTCATGGAGATGAAGCTGACATTGGCTCAAAGGGGGTGACAATAATTGGCAATAGCTGCGTTAGTGATGTTGGGAACTCTACTAGAAAGTTGTCTGCTACTGAGATACCAAAACAAGGGAAACAGACTCAGGTGCTTCATGGTTTACCAGATTTTGCTGAAGTTTATAGCTTCATTGGAAGTATTTTTGATCCAGACACAGAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTGATGAAAAATCTCACTCTCAACTTGTCTAGTCCTGACTTTGTGCCCGTTAGGAAAGCCATGTCATCATACGATGCCAACACGGAATTACGGCAGGAATTGATGTCAAGAAATAGACAAAGGATCTATAATGTCAAACAGCTCAACAAACATTAA 843 0.4294 MAMAPSTPSSGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAVHPYPQKESKNVLVPFPASLAYVSPTWDESFLLMSSGSNRSLPYQDELTNLHGDEADIGSKGVTIIGNSCVSDVGNSTRKLSATEIPKQGKQTQVLHGLPDFAEVYSFIGSIFDPDTEGHVQKLKEMDPINFETVLLLMKNLTLNLSSPDFVPVRKAMSSYDANTELRQELMSRNRQRIYNVKQLNKH 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2968g00017 280 SMART sant 25 73 IPR001005 -
Vium2968g00017 280 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Vium2968g00017 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Vium2968g00017 280 PANTHER SWI/SNF COMPLEX-RELATED 12 263 - -
Vium2968g00017 280 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Vium2968g00017 280 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Vium2968g00017 280 CDD SANT 28 71 IPR001005 -
Vium2968g00017 280 MobiDBLite consensus disorder prediction 1 26 - -
Vium2968g00017 280 FunFam protein REVEILLE 6 isoform X1 28 76 - -
Vium2968g00017 280 MobiDBLite consensus disorder prediction 1 16 - -
Vium2968g00017 280 NCBIfam myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Vium2968g00017 280 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Vium2968g00017 280 Gene3D - 29 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2968g00017 Vium-Chr2968 82721 85400 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium2968g00017 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2968g00017 - - gmx:100783482 429.869