Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2968g00010 ATGGATATTAAGGAAGCAGAAAGGGTGGTGATTGCCAAACCTGTTGCTTCAAGACCTACTTGTTCTACTTTCAAATCTTTCTCAGAGCTTTTAGCTGGTGCAATCAATGTTTCTCCTGATATTGCATCTTCTCAGGCTACAGTTTCTGCCATTAGACCCAAGACTGTGAGGTTCAAGCCTGCATCATTGAATCACCCCCATACAGGGTTTGATTCTTGTCAGGCTGATACTTTTGGAGCTGCACTCAGTAACTCTTCTGACAAGATTGCAAAACTTGACCACAATCAGTCCCTCATATACAAACCAACGGCAAAACTTGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGAAGGGAAATTGCAGCACTGGTCAGCGGCAAACACGGCAGTTAATGGAGGCCAATTTTCAACATTCCATCAATGAAAAGTTTAGAACCAACATGAGTTCACATCTTGATCAGAGTATTGCCCCGCATGCAGAAATAAACGAGATCAGCGAAGCTAGTAAGATGGTGCAGCAGAACACAGAGGAAGAGCAGAAGACTTTAACATCCTCAGCGAATTGTGATCGACCTTCTTATGATGGGTACAACTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGTGAGTACCCCAGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTTTATAAAGGTGAACATAACCATTTGAAGCCACAGCTACCTAAAAGAAACACAGCAACAGGGACACAAGGTTCGGGGGTGTTGTCTGATGGAATGGTTCAAGACATGTGGAGTAATAGTCACAGCGAGAGGAATGAAGGCAATGAAAGTAGAGTTGAGAACACAGGAGGAGGACTATCTGTGCTTTCAGATTATTATGTCAAACTTCCACAGCCTAATGATTCTGGTCTAAATATTGGTGCGACTAATGCTGGTGGAGGAAGCACGGAAAACTCCTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGTTATGAGGCACACGAAGATGAACCCAGAAGTAAAAGAAGGCCATCCTTCCTGTGCATCCTGTCCAAAAACAGTTACTGTTCATCAAGTAACATGAAAAATGAGAATCTATCTAATGAAGTAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTCACTGATTCTGAAATACTTGGAGATGGATTTCGCTGGAGGAAATACGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGCTACTACAGATGTACTAATGTAAAGTGCAACGTTCGTAAACACGTGGAGAGAGCAATAGATGACCCGAGATCATTTGTGACCACATATGAAGGAAAACACAATCATGATATGCCTCTCAAGAACACAGGAAATGTGGCCTCTGAGAGAGACTCACAGGCTTCTCTTTGTAAAGATAAAGCATGA 1479 0.4273 MDIKEAERVVIAKPVASRPTCSTFKSFSELLAGAINVSPDIASSQATVSAIRPKTVRFKPASLNHPHTGFDSCQADTFGAALSNSSDKIAKLDHNQSLIYKPTAKLVSKTTVSLLANMKGNCSTGQRQTRQLMEANFQHSINEKFRTNMSSHLDQSIAPHAEINEISEASKMVQQNTEEEQKTLTSSANCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHLKPQLPKRNTATGTQGSGVLSDGMVQDMWSNSHSERNEGNESRVENTGGGLSVLSDYYVKLPQPNDSGLNIGATNAGGGSTENSCGLSGECEEGSKGYEAHEDEPRSKRRPSFLCILSKNSYCSSSNMKNENLSNEVALSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRSFVTTYEGKHNHDMPLKNTGNVASERDSQASLCKDKA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2968g00010 492 FunFam WRKY transcription factor 179 254 - -
Vium2968g00010 492 MobiDBLite consensus disorder prediction 250 274 - -
Vium2968g00010 492 SMART WRKY_cls 410 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 SUPERFAMILY WRKY DNA-binding domain 403 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 ProSiteProfiles WRKY domain profile. 405 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 SUPERFAMILY WRKY DNA-binding domain 193 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 MobiDBLite consensus disorder prediction 461 492 - -
Vium2968g00010 492 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 140 476 IPR044810 GO:0003700
Vium2968g00010 492 ProSiteProfiles WRKY domain profile. 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 MobiDBLite consensus disorder prediction 326 355 - -
Vium2968g00010 492 FunFam WRKY transcription factor 57 396 470 - -
Vium2968g00010 492 Gene3D WRKY domain 179 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 Gene3D WRKY domain 396 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 Pfam WRKY DNA -binding domain 412 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 Pfam WRKY DNA -binding domain 196 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00010 492 MobiDBLite consensus disorder prediction 255 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2968g00010 Vium-Chr2968 40974 47481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2968g00010 93 471 WRKY Transcription Factor Family AT2G37260 43.687 8.09e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium2968g00010 WRKY 7.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2968g00010 - - vra:106757963 962.985