Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2968g00009 ATGGATATTAAGGAAGCAGAAAGGGTGGTGATTGCCAAACCTGTTGCTTCAAGACCTACTTGTTCTACTTTCAAATCTTTCTCAGAGCTTTTAGCTGGTGCAATCAATGTTTCTCCTGATATTGCATCTTCTCAGGCTACAGTTTCTGCCATTAGACCCAAGACTGTGAGGTTCAAGCCTGCATCATTGAATCACCCCCATACAGGGTTTGATTCTTGTCAGGCTGATACTTTTGGAGCTGCACTCAGTAACTCTTCTGACAAGATTGCAAAACTTGACCACAATCAGTCCCTCATATACAAACCAACGGCAAAACTTGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGAAGGGAAATTGCAGCACTGGTCAGCGGCAAACACGGCAGTTAATGGAGGCCAATTTTCAACATTCCATCAATGAAAAGTTTAGAACCAACATGAGTTCACATCTTGATCAGAGTATTGCCCCGCATGCAGAAATAAACGAGATCAGCGAAGCTAGTAAGATGGTGCAGCAGAACACAGAGGAAGAGCAGAAGACTTTAACATCCTCAGCGAATTGTGATCGACCTTCTTATGATGGGTACAACTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGTGAGTACCCCAGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTTTATAAAGGTGAACATAACCATTTGAAGCCACAGCTACCTAAAAGAAACACAGCAACAGGGACACAAGGTTCGGGGGTGTTGTCTGATGGAATGGTTCAAGACATGTGGAGTAATAGTCACAGCGAGAGGAATGAAGGCAATGAAAGTAGAGTTGAGAACACAGGAGGAGGACTATCTGTGCTTTCAGATTATTATGTCAAACTTCCACAGCCTAATGATTCTGGTCTAAATATTGGTGCGACTAATGCTGGTGGAGGAAGCACGGAAAACTCCTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGTTATGAGGCACACGAAGATGAACCCAGAAGTAAAAGAAGGAAAAATGAGAATCTATCTAATGAAGTAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTCACTGATTCTGAAATACTTGGAGATGGATTTCGCTGGAGGAAATACGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGCTACTACAGATGTACTAATGTAAAGTGCAACGTTCGTAAACACGTGGAGAGAGCAATAGATGACCCGAGATCATTTGTGACCACATATGAAGGAAAACACAATCATGATATGCCTCTCAAGAACACAGGAAATGTGGCCTCTGAGAGAGACTCACAGGCTTCTCTTTGTAAAGATAAAGCATGA 1425 0.4274 MDIKEAERVVIAKPVASRPTCSTFKSFSELLAGAINVSPDIASSQATVSAIRPKTVRFKPASLNHPHTGFDSCQADTFGAALSNSSDKIAKLDHNQSLIYKPTAKLVSKTTVSLLANMKGNCSTGQRQTRQLMEANFQHSINEKFRTNMSSHLDQSIAPHAEINEISEASKMVQQNTEEEQKTLTSSANCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHLKPQLPKRNTATGTQGSGVLSDGMVQDMWSNSHSERNEGNESRVENTGGGLSVLSDYYVKLPQPNDSGLNIGATNAGGGSTENSCGLSGECEEGSKGYEAHEDEPRSKRRKNENLSNEVALSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRSFVTTYEGKHNHDMPLKNTGNVASERDSQASLCKDKA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2968g00009 474 FunFam WRKY transcription factor 179 254 - -
Vium2968g00009 474 MobiDBLite consensus disorder prediction 443 474 - -
Vium2968g00009 474 MobiDBLite consensus disorder prediction 344 366 - -
Vium2968g00009 474 Pfam WRKY DNA -binding domain 394 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 Pfam WRKY DNA -binding domain 196 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 MobiDBLite consensus disorder prediction 250 274 - -
Vium2968g00009 474 SUPERFAMILY WRKY DNA-binding domain 385 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 ProSiteProfiles WRKY domain profile. 387 452 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 Gene3D WRKY domain 378 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 Gene3D WRKY domain 179 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 140 458 IPR044810 GO:0003700
Vium2968g00009 474 MobiDBLite consensus disorder prediction 322 366 - -
Vium2968g00009 474 SUPERFAMILY WRKY DNA-binding domain 193 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 ProSiteProfiles WRKY domain profile. 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 SMART WRKY_cls 392 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2968g00009 474 MobiDBLite consensus disorder prediction 322 338 - -
Vium2968g00009 474 MobiDBLite consensus disorder prediction 255 274 - -
Vium2968g00009 474 FunFam WRKY transcription factor 57 378 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2968g00009 Vium-Chr2968 40974 47481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2968g00009 93 453 WRKY Transcription Factor Family AT2G37260 45.767 1.91e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium2968g00009 WRKY 6.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2968g00009 - - vra:106757963 925.235