Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2968g00008 ATGGGTTGGATTCCCTGTTCTGGATATTCAGGCACTAAGAACAAGATTGATAAGATGGAAGTTCAGGACAGTCTCGTTGGTCAGATCAAAGCCACACCAGGAAAGTTGAAGAGAAATACATCCACAAATTCAAAAGATACATCAAAAAATGGGAACCCTGATCACATTGCAGCACAGACATTCTCATTTCGCGAGTTGGCAACTGCAACTAGAAATTTTAGAGCTGAGTGTCTTCTGGGAGAGGGAGGCTTTGGTAGAGTGTACAAAGGGCGTCTGGAAAGTATTAATCAGGTTGTTGCCATTAAGCAACTCGACCGAAATGGGCTCCAAGGAAATAGGGAATTCCTTGTTGAAGTGCTGATGTTAAGTCTACTTCATCATCCAAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATTTATGCCGTTAGGATCCCTGGAAGACCACTTGCATGACATTCCTCTTGGCAAGAAACGACTAGAGTGGAATACACGAATGAGAATAGCTGCCGGTGCAGCCAAGGGATTGGAATATCTACACGACAAAGCTAATCCTCCTGTCATCTACCGTGATTTAAAGTGCTCTAACATTTTGCTTGGTGAAGGGTATCACCCAAAGTTATCTGATTTTGGTTTGGCTAAGCTTGGCCCAGTTGGGGAGAACACACATGTATCAACAAGAGTTATGGGGACTTATGGATATTGTGCTCCAGAGTATGCCATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACCGGAAGGAAAGCAATTGACAATTCAAAATCTGCTGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAGGGATAGAAGAAAGTTTTCTCAAATGGCTGATCCAACACTCCAAGGTCAATATCCTCCGAGAGGACTATACCAAGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCTAACATGCGTCCAGTTATAGCTGATGTTGTAACGGCTTTGTCTTACCTTGCTTCACAAAAATATGATCCCAATACACACACAGTCCAAAACTCACGCCTTGCTCCGGGTACTCCTCCTAGAACCAGGAGGGGGCTATGA 1140 0.436 MGWIPCSGYSGTKNKIDKMEVQDSLVGQIKATPGKLKRNTSTNSKDTSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDIPLGKKRLEWNTRMRIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFRDRRKFSQMADPTLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDPNTHTVQNSRLAPGTPPRTRRGL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2968g00008 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vium2968g00008 379 FunFam Serine/threonine-protein kinase PBS1 150 365 - -
Vium2968g00008 379 Gene3D Transferase(Phosphotransferase) domain 1 150 368 - -
Vium2968g00008 379 SUPERFAMILY Protein kinase-like (PK-like) 57 345 IPR011009 -
Vium2968g00008 379 Gene3D Phosphorylase Kinase; domain 1 57 149 - -
Vium2968g00008 379 MobiDBLite consensus disorder prediction 359 379 - -
Vium2968g00008 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Vium2968g00008 379 CDD STKc_IRAK 79 347 - -
Vium2968g00008 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2968g00008 379 PIRSF ILK 11 363 - -
Vium2968g00008 379 MobiDBLite consensus disorder prediction 34 54 - -
Vium2968g00008 379 Pfam Protein tyrosine and serine/threonine kinase 77 345 IPR001245 GO:0004672|GO:0006468
Vium2968g00008 379 FunFam Serine/threonine-protein kinase PBS1 45 149 - -
Vium2968g00008 379 PANTHER OS07G0668900 PROTEIN 35 359 - -
Vium2968g00008 379 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2968g00008 379 MobiDBLite consensus disorder prediction 32 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2968g00008 Vium-Chr2968 33805 37017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2968g00008 33 352 Glycoside Hydrolase AT3G07070 67.500 4.71e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium2968g00008 PK_Tyr_Ser-Thr 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2968g00008 - - gmx:100818024 738.413