Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2961g00009 ATGACGATGAAGAGGCTGGTGAGAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTCCTCAAGGAGGCCACTGCCATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTGGAGAAAATGAGGCCAGATAACAGTTTGCAGGATTTAAGGAACAAAATTTTCCCTTTCAATAAAAGAAAGCAGAAGGCACCTGTAGCCATCCCTTCAGTACTATTACCAGCTAGAAGAAAGGAAAGATCACTGTCATCTTTGGTTGTCAACACTCCAAGGGTATCTACACAATCAACCATGACAGGGAGAAGAACAAAACCTACAAGAAAGGCACTAGGCCTGCAGGGCTCTGGTTTCTCTGTTGAAAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCGCCAAGATAGTTCGTGCTCACCTGACACTTCAAACAAGTCTGCAAAGAGTGCGGGACAGAGTTTGTCACCTTGTAAAAATAGTCAATCCATATGCAATAGAGGACTGCAGAATGGTGCTGAAACACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGTCTTTCAAGTCTAATGTGCAATCGTCTAATGCTAAACCAGAATCCGTGAAAGTAAATGACAGCGATAATAAAGTGCTGAAAGGCAAACATGAGGAAAATAAGCGCAAGGCAAAAGTTGAAGATGAAAAGATTAGCACTGATCATGTCTCTCCAGATACAGCAAAACCCAACAAACTGCGAAGAGTTCGCCCAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCCCCTCAGGCTGTTCTGGATGCTAATGATAGTAACCTCTTATGGAATGACTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAATCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGACGGAAGCATACCTGTCTCATTTATCCAAAAACTGTTAATGAAGAAACTGGGCCTGAAAAGTGAGGATGAGGTTGAGATCAAATGCATGGGACATCCTGTGCTTCCTTCACTACAGGTACAGAATTTAGTTGAATTGTGGCTTGATACGGCATCTACAGGCCACAGAATTCCTGCAACCATAGGATCCTCAGGGAAAGATTTTGTGATGATCCTAACCTATGGTCGGAAGGTCCAACAACCTTGA 1290 0.4186 MTMKRLVRVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFNKRKQKAPVAIPSVLLPARRKERSLSSLVVNTPRVSTQSTMTGRRTKPTRKALGLQGSGFSVEKLIKKEEELLEDRQDSSCSPDTSNKSAKSAGQSLSPCKNSQSICNRGLQNGAETQEAKWDLWKTLNYLAEAASRSKSFKSNVQSSNAKPESVKVNDSDNKVLKGKHEENKRKAKVEDEKISTDHVSPDTAKPNKLRRVRPKKEPVFGESRISPQAVLDANDSNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGHRIPATIGSSGKDFVMILTYGRKVQQP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2961g00009 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 102 IPR013083 -
Vium2961g00009 429 MobiDBLite consensus disorder prediction 167 191 - -
Vium2961g00009 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 426 IPR044807 GO:0004842
Vium2961g00009 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Vium2961g00009 429 MobiDBLite consensus disorder prediction 226 243 - -
Vium2961g00009 429 MobiDBLite consensus disorder prediction 121 142 - -
Vium2961g00009 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Vium2961g00009 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Vium2961g00009 429 MobiDBLite consensus disorder prediction 226 295 - -
Vium2961g00009 429 CDD RING-HC_PCGF 18 61 - -
Vium2961g00009 429 SUPERFAMILY RING/U-box 15 85 - -
Vium2961g00009 429 MobiDBLite consensus disorder prediction 244 295 - -
Vium2961g00009 429 SMART ring_2 20 60 IPR001841 -
Vium2961g00009 429 MobiDBLite consensus disorder prediction 161 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2961g00009 Vium-Chr2961 44210 49389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2961g00009 1 348 C3H Transcription Factor Family AT2G30580 47.293 3.51e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2961g00009 K16277 - gmx:100778462 748.429