Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2960g00001 ATGGAAATAGACATTAACACAGACATCGATGCAATCCACAACCTCCACTTCTCCGGATACACTACCATCACCGACACCACCCCCTCTTCTGACGACGACTACGGTTGCAACTGGAACCACTGGTCCCCCCTCGTCAACTGGGACGCCTTCACCGGATCCCACGATGACTTCCACCACCTCATCGACTCTATCGTCTCCGACGGTCCCGCCGAGTACCCCAGCCCCGAAGACCACGCCGCCAGTAACTCCCCCTCCACCTCCATAACCGAGGAAGATGACGCCGAGGAAGAAACGGCTGCCGCCGACGATTCCAAGGGCCTAAGACTGGTCCATCTGCTCATGGCCGCCGCGGAGGCCCTCACCGGCGCCACCAAGAGTCGCGACCTGGCTCGAGTGATATTGGTTCGGCTCAGGGATTTGGTGTCCCACGCCTCGCACGGCTCCAACATGGAGAGACTCGCCGCCTACTTCACCGACGCACTCCAGGGCCTGCTAGAAGGCGCCGGGGGTGCGCACAATAACAGCAAACATCACTACTACATCACATGTGGGTCCCACCACCCCCGCGACGATCATCATCATCATCAAAACGACACCCTCGCGGCCTTCCAACTGCTCCAGGACATATCTCCCTACGTCAAGTTCGGACACTTCACCGCCAACCAGGCCATCCTCGAGGCCGTGGCCCACGAGCGCCGAGTCCACATCGTAGACTACGACATCATGGAGGGCGTCCAGTGGGCTTCTCTCATGCAGGCCCTTGCCTCCGACAAAACAGGTCCACCGGGCCCACACCTTCGAATCACAGCATTGTCCAGAACCGGCACCGGACGCCGCTCCATCGCCAGCGTGCAGGAGACCGGGAGGCGGTTGACGGCGTTTGCCGCATCCCTTGTGCAGCCGTTCACGTTCCACCAGTGCAGGTTGGATCCCGACGAAACGTTTAAACCTTCCTCTCTGAAGCTGGTTCGCGGAGAGGCTTTGGTTTTTAACTGTATGTTAAACTTGCCGCACCTGAGTTACCGCGCGCCCGATTCGATTGCGTCGTTTTTGAGTGGAGCGAAAGAGTTGAAGCCGAGGCTGGTGACTTTGGTGGAGGAAGAGGTGGGGTCCAGTGTGGGAGGGTTCGTGGGAAGGTTCATGGACTCGCTGCATCACTACTCGGCGGTGTTTGACTCGCTGGAGGCTGGGTTTCCGATGCAGGGGCGGGCCAGGGCCCTTGTAGAGCGGATTTTCTTAGGCCCAAGGATAGTTGGCTCGCTGGCCCGGATATATCGGACGGGTGAAGAGCTGGAGGAGAGAAGGTCATGGGGGGAGTGGTTGGGTGCGGCAGGGTTCAGGGGAGTCCCGATGAGCTTCGCCAATCATTGCCAAGCGAAGCTTCTACTGGGTCTTTTCAACGACGGATATCGGGTGGAGGAGTTGGGGACTAATAAGTTGGTGTTGGATTGGAAATCTCGGCGCTTGCTTTCTGCCTCCCTTTGGACTTCTTCTTCCTCAGACTCCCATTAA 1512 0.5853 MEIDINTDIDAIHNLHFSGYTTITDTTPSSDDDYGCNWNHWSPLVNWDAFTGSHDDFHHLIDSIVSDGPAEYPSPEDHAASNSPSTSITEEDDAEEETAAADDSKGLRLVHLLMAAAEALTGATKSRDLARVILVRLRDLVSHASHGSNMERLAAYFTDALQGLLEGAGGAHNNSKHHYYITCGSHHPRDDHHHHQNDTLAAFQLLQDISPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASDKTGPPGPHLRITALSRTGTGRRSIASVQETGRRLTAFAASLVQPFTFHQCRLDPDETFKPSSLKLVRGEALVFNCMLNLPHLSYRAPDSIASFLSGAKELKPRLVTLVEEEVGSSVGGFVGRFMDSLHHYSAVFDSLEAGFPMQGRARALVERIFLGPRIVGSLARIYRTGEELEERRSWGEWLGAAGFRGVPMSFANHCQAKLLLGLFNDGYRVEELGTNKLVLDWKSRRLLSASLWTSSSSDSH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2960g00001 503 Pfam GRAS domain family 109 496 IPR005202 -
Vium2960g00001 503 MobiDBLite consensus disorder prediction 68 93 - -
Vium2960g00001 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 92 491 IPR005202 -
Vium2960g00001 503 ProSiteProfiles GRAS family profile. 100 496 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2960g00001 Vium-Chr2960 5597 7439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2960g00001 77 501 GRAS Transcription Factor Family AT5G41920 35.797 1.61e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2960g00001 GRAS 1.8e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2960g00001 - - gmx:100787926 779.245