Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2959g00022 ATGGCTAATGAAGGAAACAAAAGCAATGACTTCTATACGATCTTGGGGTTGAACAAGGAGTGCACTGAATTGGAGCTAAAGAAGGCATATAAGAAACTTGCAAAGAAGTGGCACCCGGATCGTTGTGCTGCATCTGGGAATTCAGAGTTAGTGGAACAAGCTAAGAAGAAATTCCAGGAAATTGGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGCTAATGTACGACGTTGGTGTCTACGATAGTGATGACGACGAAAACGGCATGGGGGACTTTTTGGACGAAATGTTAACAATGATGAGTCAGACCAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCATCAGTTGTTTGAAGACATGTTTCAAGCTGATATTGGATTGGATGGAAGCCCCTCTCTTTCTTCTGCCGATTGCTCTAATTCATCTGCTTACATGACTTACAGTGAAAGTTCTAGTTCAAATAAACGCAATTCCACTGAGATGAAATTTGGGAAGGCAGAGGACTCCTCTGTCTTTGATACCAGTTACCAGAATTTCTGTTTTGGGGTGAACCTACTCCAAGATATAGAGGAAGAAAAGGAGAGAATTCCAGAAGGAGGAGGTAGAAATGGCAGAAAGCAAAAAATATCCTATGAACATGATGTTTAA 663 0.4118 MANEGNKSNDFYTILGLNKECTELELKKAYKKLAKKWHPDRCAASGNSELVEQAKKKFQEIGEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELHQLFEDMFQADIGLDGSPSLSSADCSNSSAYMTYSESSSSNKRNSTEMKFGKAEDSSVFDTSYQNFCFGVNLLQDIEEEKERIPEGGGRNGRKQKISYEHDV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2959g00022 220 CDD DnaJ 10 70 IPR001623 -
Vium2959g00022 220 Pfam DnaJ domain 10 78 IPR001623 -
Vium2959g00022 220 SUPERFAMILY Chaperone J-domain 7 93 IPR036869 -
Vium2959g00022 220 PANTHER PUTATIVE, EXPRESSED-RELATED 2 180 - -
Vium2959g00022 220 PRINTS DnaJ domain signature 12 30 IPR001623 -
Vium2959g00022 220 PRINTS DnaJ domain signature 73 92 IPR001623 -
Vium2959g00022 220 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vium2959g00022 220 PRINTS DnaJ domain signature 30 45 IPR001623 -
Vium2959g00022 220 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Vium2959g00022 220 MobiDBLite consensus disorder prediction 197 220 - -
Vium2959g00022 220 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vium2959g00022 220 Gene3D DnaJ domain 7 134 IPR036869 -
Vium2959g00022 220 SMART dnaj_3 9 73 IPR001623 -
Vium2959g00022 220 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2959g00022 Vium-Chr2959 129792 133196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2959g00022 12 78 C2H2 Transcription Factor Family AT1G74250 42.647 1.51e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2959g00022 - - gmx:100791192 345.895