Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2959g00021 ATGGCTAATGAAGGAAACAAAAGCAATGACTTCTATACGATCTTGGGGTTGAACAAGGAGTGCACTGAATTGGAGCTAAAGAAGGCATATAAGAAACTTGCAAAGAAGTGGCACCCGGATCGTTGTGCTGCATCTGGGAATTCAGAGTTAGTGGAACAAGCTAAGAAGAAATTCCAGGAAATTGGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGCTAATGTACGACGTTGGTGTCTACGATAGTGATGACGACGAAAACGGCATGGGGGACTTTTTGGACGAAATGTTAACAATGATGAGTCAGACCAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCATCAGTTGTTTGAAGACATGTTTCAAGCTGATATTGGATTGGATGGAAGCCCCTCTCTTTCTTCTGCCGATTGCTCTAATTCATCTGCTTACATGACTTACAGTGAAAGTTCTAGTTCAAATAAACGCAATTCCACTGAGATGAAATTTGGGAAGGCAGAGGACTCCTCTGTCTTTGATACCAGTTACCAGAATTTCTGTTTTGGGGTCGGTCATGTAAACTATCATTACCAATGA 591 0.4162 MANEGNKSNDFYTILGLNKECTELELKKAYKKLAKKWHPDRCAASGNSELVEQAKKKFQEIGEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELHQLFEDMFQADIGLDGSPSLSSADCSNSSAYMTYSESSSSNKRNSTEMKFGKAEDSSVFDTSYQNFCFGVGHVNYHYQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2959g00021 196 CDD DnaJ 10 70 IPR001623 -
Vium2959g00021 196 Gene3D DnaJ domain 7 134 IPR036869 -
Vium2959g00021 196 Pfam DnaJ domain 10 78 IPR001623 -
Vium2959g00021 196 SUPERFAMILY Chaperone J-domain 7 93 IPR036869 -
Vium2959g00021 196 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Vium2959g00021 196 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vium2959g00021 196 PRINTS DnaJ domain signature 30 45 IPR001623 -
Vium2959g00021 196 PRINTS DnaJ domain signature 12 30 IPR001623 -
Vium2959g00021 196 PRINTS DnaJ domain signature 73 92 IPR001623 -
Vium2959g00021 196 PANTHER PUTATIVE, EXPRESSED-RELATED 2 177 - -
Vium2959g00021 196 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vium2959g00021 196 SMART dnaj_3 9 73 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2959g00021 Vium-Chr2959 129792 133196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2959g00021 12 78 C2H2 Transcription Factor Family AT1G74250 42.647 9.64e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2959g00021 - - gmx:100791192 314.694