Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2959g00011 ATGGCCGCCACAACCAACGCCGCTGCTCCGCCGCGCCAGCTCTCTCCAAAGGAAACCGACATCCAGATGATGTTGGCAGCCGACGTTCACCTCGGCACCAAAAACTGTGATTTTCAAATGGAGCGCTACATCTTCAAGCGCCGCAACGACGGTATTTACATTATCAACCTTGGTAAGACATGGGAGAAGCTTCAACTTGCTGCTAGGGTTATCGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCTGCTCGCCCTTATGGTCAGAGAGCGGTTCTCAAGTTTGCTCAGTACACTGGTGCTCATGCCATTGCTGGAAGGCATACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCTTTTAGCGAGCCTCGCCTCCTTATCCTTACGGATCCCAGAACAGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCACCCATGAGGTATGTGGACATTGGGATTCCTGCCAACAACAAGGGCAAACACAGCATTGGGTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGTCCTGGCCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATCACTGACTATAATCCTGGTGCTATTGCTTCTGATGGCCAGTGGCCCGGTACAATTGATCAATCGTGGACAGATGCAGTTCCACAACCTATTCCCGCTGTACCTGGCGTCAACTGGGGAGCACCAGCCTCTACAGATGCACCCGCTGCAGGAGATTGGGGCGAGGCTGTTCCACCACCACAACAAATCCCTCTTCCTCCTTCCGGAGTTGAATCTGTCCAAGCAAGTGGCTGGGATTAA 930 0.5086 MAATTNAAAPPRQLSPKETDIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIASDGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPASTDAPAAGDWGEAVPPPQQIPLPPSGVESVQASGWD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2959g00011 309 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Vium2959g00011 309 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 Hamap 40S ribosomal protein SA [rps-0]. 8 286 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vium2959g00011 309 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 FunFam 40S ribosomal protein SA 20 226 - -
Vium2959g00011 309 MobiDBLite consensus disorder prediction 215 309 - -
Vium2959g00011 309 Gene3D - 20 226 - -
Vium2959g00011 309 PANTHER 40S RIBOSOMAL PROTEIN SA 11 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vium2959g00011 309 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00011 309 NCBIfam 30S ribosomal protein S2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2959g00011 Vium-Chr2959 75411 77389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2959g00011 3 281 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.737 2.92e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2959g00011 K02998 - gmx:548014 581.637