Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2959g00010 ATGGCCGCCACAACCAACGCCGCTGCTCCGCCGCGCCAGCTCTCTCCAAAGGAAACCGACATCCAGATGATGTTGGCAGCCGACGTTCACCTCGGCACCAAAAACTGTGATTTTCAAATGGAGCGCTACATCTTCAAGCGCCGCAACGACGGTATTTACATTATCAACCTTGGTAAGACATGGGAGAAGCTTCAACTTGCTGCTAGGGTTATCGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCTGCTCGCCCTTATGGTCAGAGAGCGGTTCTCAAGTTTGCTCAGTACACTGGTGCTCATGCCATTGCTGGAAGGCATACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCTTTTAGCGAGCCTCGCCTCCTTATCCTTACGGATCCCAGAACAGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCACCCATGAGGTATGTGGACATTGGGATTCCTGCCAACAACAAGGGCAAACACAGCATTGGGTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGTCCTGGCCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATCACTGACTATAATCCTGGTGCTATTGCTTCTGATGGCCAGTGGCCCGGTACAATTGATCAATCGTGGACAGATGCAGTTCCACAACCTATTCCCGCTGTACCTGGCGTCAACTGGGGAGCACCAGCCTCTACAGATGCACCCGAAATTGCAGCTGCAGGAGATTGGGGCGAGGCTGTTCCACCACCACAACAAATCCCTCTTCCTCCTTCCGGAGTTGAATCTGTCCAAGCAAGTGGCTGGGATTAA 939 0.5069 MAATTNAAAPPRQLSPKETDIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIASDGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPASTDAPEIAAAGDWGEAVPPPQQIPLPPSGVESVQASGWD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2959g00010 312 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 MobiDBLite consensus disorder prediction 264 312 - -
Vium2959g00010 312 PANTHER 40S RIBOSOMAL PROTEIN SA 11 296 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vium2959g00010 312 Hamap 40S ribosomal protein SA [rps-0]. 8 289 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vium2959g00010 312 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 Gene3D - 20 226 - -
Vium2959g00010 312 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 NCBIfam 30S ribosomal protein S2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vium2959g00010 312 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vium2959g00010 312 FunFam 40S ribosomal protein SA 20 226 - -
Vium2959g00010 312 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2959g00010 Vium-Chr2959 75410 77389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2959g00010 3 284 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.386 2.79e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2959g00010 K02998 - gmx:100805318 582.022