Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2958g00004 ATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAGGGCTAAGAATGGTTCACAAGATAGTGAAAGGACAGTTCTTATTGTTCCTGATAACTTACCATCAGATTGTCCTGTGGATAAGCCTTCAACATCTAAGCCTTCAACTTCAAGGTCTCTTTCTCTTAACAAGATTCTGTTTGCTTCATCAACCAAAGCCACACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCCAGGGTGTGATTCTGATTTAAGTAAAATGGAAGTAAATCAGCACATTACTCGATCGGTTTCCGTTCCTGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTAATTTCGGCAAGATCACTTCTAACAACTGGTGAAGGCATCTCAACTCAGAATGCTTCCGGTTCAGAGATTGTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTAGAGCTTGCAGAAGGAGGTAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAAGAAGTCCTTAACCTCCCCGTAACACTGTTGAAAATTTCTAATCCTCAAACTGTTTCTCCACAGCCAATGAATGCACCACGATCACAGCAGAGAGAGGTGACTTCTTATAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTTCAGATATGGGCACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTGGGACTCCTTTCATCTATGATTGCTTCAACAATGGTGAACGGTAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACCATACTTAATGTTAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTCTGGTAACGGAATATGTTAGATGGAGAATGAGAAGATTGATTCAATCTTCTACGACACAGCAACTGCGTCGTGATCATGCACACCAACAGCAAGAACATCAAAGATTGCATCCTCAACTGCAAAGGCCGCAGCATGAGCAGCACCAATGA 1221 0.4128 MKSLLSERSFRAKNGSQDSERTVLIVPDNLPSDCPVDKPSTSKPSTSRSLSLNKILFASSTKATHSLPVTPTANSGAEIVQGRHPGCDSDLSKMEVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTGEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVSPQPMNAPRSQQREVTSYRIWQDLSVLILVSMLAYFCFLEELLVSDMGTHALAISLPFSCVLGLLSSMIASTMVNGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQLRRDHAHQQQEHQRLHPQLQRPQHEQHQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2958g00004 406 MobiDBLite consensus disorder prediction 381 406 - -
Vium2958g00004 406 Pfam RING-variant domain 165 212 IPR011016 GO:0008270
Vium2958g00004 406 ProSiteProfiles Zinc finger RING-CH-type profile. 157 219 IPR011016 GO:0008270
Vium2958g00004 406 MobiDBLite consensus disorder prediction 1 49 - -
Vium2958g00004 406 MobiDBLite consensus disorder prediction 382 406 - -
Vium2958g00004 406 MobiDBLite consensus disorder prediction 35 49 - -
Vium2958g00004 406 SMART ringv_2 164 213 IPR011016 GO:0008270
Vium2958g00004 406 CDD RING_CH-C4HC3_MARCH 165 213 - -
Vium2958g00004 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 220 IPR013083 -
Vium2958g00004 406 MobiDBLite consensus disorder prediction 1 23 - -
Vium2958g00004 406 PANTHER OS02G0165000 PROTEIN 1 384 - -
Vium2958g00004 406 SUPERFAMILY RING/U-box 161 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2958g00004 Vium-Chr2958 13696 29720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2958g00004 150 219 C3H Transcription Factor Family AT2G37950 42.254 5.22e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2958g00004 - - pvu:PHAVU_006G002500g 756.903