Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2958g00003 ATGGACAAGGCAGCTGCTGAACTTCAACGTGAGGCAGCAGATCCTTCTACTCTTCGTCACCATCATCAGTGTTGTGCTGGAAATGGGATTGGTGACAGTACCTCCTTGATTCTAGAGTCCAGAAGACCACGTCTCTCCTCTCTGCAAATACCAGCAAGGTCAGTGGAAAATGCATTATCCTCTTTCACAAAGACAGATGGTCCTACATTGATATCAAGTCCAGGTTCCAGTAGAGGACTTCCCCCAAGGCCAAATTCAGCCAGAGTCAAGTCCACTATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAGGGCTAAGAATGGTTCACAAGATAGTGAAAGGACAGTTCTTATTGTTCCTGATAACTTACCATCAGATTGTCCTGTGGATAAGCCTTCAACATCTAAGCCTTCAACTTCAAGGTCTCTTTCTCTTAACAAGATTCTGTTTGCTTCATCAACCAAAGCCACACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCCAGGGTGTGATTCTGATTTAAGTAAAATGGAAGTAAATCAGCACATTACTCGATCGGTTTCCGTTCCTGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTAATTTCGGCAAGATCACTTCTAACAACTGGTGAAGGCATCTCAACTCAGAATGCTTCCGGTTCAGAGATTGTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTAGAGCTTGCAGAAGGAGGTAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAAGAAGTCCTTAACCTCCCCGTAACACTGTTGAAAATTTCTAATCCTCAAACTGTTTCTCCACAGCCAATGAATGCACCACGATCACAGCAGAGAGAGGTGACTTCTTATAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTTCAGATATGGGCACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTGGGACTCCTTTCATCTATGATTGCTTCAACAATGGTGAACGGTAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACCATACTTAATGTTAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTCTGGTAACGGAATATGTTAGATGGAGAATGAGAAGATTGATTCAATCTTCTACGACACAGCAACTGCGTCGTGATCATGCACACCAACAGCAAGAACATCAAAGATTGCATCCTCAACTGCAAAGGCCGCAGCATGAGCAGCACCAATGA 1497 0.4248 MDKAAAELQREAADPSTLRHHHQCCAGNGIGDSTSLILESRRPRLSSLQIPARSVENALSSFTKTDGPTLISSPGSSRGLPPRPNSARVKSTMKSLLSERSFRAKNGSQDSERTVLIVPDNLPSDCPVDKPSTSKPSTSRSLSLNKILFASSTKATHSLPVTPTANSGAEIVQGRHPGCDSDLSKMEVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTGEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVSPQPMNAPRSQQREVTSYRIWQDLSVLILVSMLAYFCFLEELLVSDMGTHALAISLPFSCVLGLLSSMIASTMVNGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQLRRDHAHQQQEHQRLHPQLQRPQHEQHQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2958g00003 498 PANTHER OS02G0165000 PROTEIN 28 475 - -
Vium2958g00003 498 MobiDBLite consensus disorder prediction 1 20 - -
Vium2958g00003 498 SUPERFAMILY RING/U-box 253 308 - -
Vium2958g00003 498 ProSiteProfiles Zinc finger RING-CH-type profile. 249 311 IPR011016 GO:0008270
Vium2958g00003 498 MobiDBLite consensus disorder prediction 473 498 - -
Vium2958g00003 498 SMART ringv_2 256 305 IPR011016 GO:0008270
Vium2958g00003 498 MobiDBLite consensus disorder prediction 60 139 - -
Vium2958g00003 498 Pfam RING-variant domain 257 304 IPR011016 GO:0008270
Vium2958g00003 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 312 IPR013083 -
Vium2958g00003 498 MobiDBLite consensus disorder prediction 60 80 - -
Vium2958g00003 498 MobiDBLite consensus disorder prediction 474 498 - -
Vium2958g00003 498 CDD RING_CH-C4HC3_MARCH 257 305 - -
Vium2958g00003 498 MobiDBLite consensus disorder prediction 88 115 - -
Vium2958g00003 498 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2958g00003 Vium-Chr2958 13695 29720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2958g00003 251 311 C3H Transcription Factor Family AT2G37950 46.774 7.52e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2958g00003 - - pvu:PHAVU_006G002500g 914.835