Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2957g00002 ATGGAAGAGAGCATTGACCCTGCAACCTCAAGCCTTCTGTGTCTGGAAAACAATGACATGTGCTTTGATGATTTTGAATATAATGTTGCAGATGAGTCTCCTTCCTGGGACCACAAAAATCCTAACTTTAACAATCAATGTCTGATTGAGGACAATCTTGGATCGGAACATGTATTGGATTCTCCTGTACTGAGTGATGAAATTGTTTTGGGTTTGATTGGGAAGGAGAGGGAACATTTGCCCCGGGATGATTACCTCGAGAGGCTGCTCGGTGGGGACTTGGAATTGAGTGTTAGGAGGAGGCAGGCTCTTGATTGGATTTGGAAGGCTCATGCACACTATGACTTTGGACCCTCTAGCTTATGTCTATCTGTGAATTACTTAGATCGGTTTCTATCGGTGTATGAATTACCAGGAGGCAACAGTTGGAGTGCACAATTGTTAGCTGTGGCATGTCTGTCAATTGCTGCTAAAATCGATGAGATTAAAGTGCCATCTTGTATAGATATACAGGTTGGAGAACCTAAGTTTCTATTTGAAGCTAAAACCATTCAAAGAATGGAACTACTGGTATTAAGCACATTGAAATGGAAAATGCAAGCTTTAACTCCATTTTCCTTCGTAGACTACTTCATCAAGAACATCACCTGTGACCAACTTCTAGTAAAGTCATCCATTCTGAGATCAGTTGGGCTCATTTTTGACATAATTAGATGTATCAATTTCTTGGAATTCAAGCCTTCTGAAATTGCCGCAGCCGTGGCAATTTCTGTGTCAAGGAAATTGCAAGCAGAAGAGATTGATGAGGCCTTAACATGTTTTGTCACTGTAGGAAAGGAAAGAATTTTGAAGTGTCTTGAACTGATTAGAGATTTGCCCTTGATCCAAGCTTCTACTAATTTGGGCAACAACTTAGCACCATTGGTACCTCAAAGCCCTATTGGAGTGCTGGATGCTGCATGCTTGATCTCTATAAATGATGAGTTAACATTTGGATTATCTACAGATTATTCGCTTGATACTCCAAATTCGAAGAGGATGAAAACTTCTGACCCTCTTGATAGGACTTTCAAGTCCTGA 1080 0.4065 MEESIDPATSSLLCLENNDMCFDDFEYNVADESPSWDHKNPNFNNQCLIEDNLGSEHVLDSPVLSDEIVLGLIGKEREHLPRDDYLERLLGGDLELSVRRRQALDWIWKAHAHYDFGPSSLCLSVNYLDRFLSVYELPGGNSWSAQLLAVACLSIAAKIDEIKVPSCIDIQVGEPKFLFEAKTIQRMELLVLSTLKWKMQALTPFSFVDYFIKNITCDQLLVKSSILRSVGLIFDIIRCINFLEFKPSEIAAAVAISVSRKLQAEEIDEALTCFVTVGKERILKCLELIRDLPLIQASTNLGNNLAPLVPQSPIGVLDAACLISINDELTFGLSTDYSLDTPNSKRMKTSDPLDRTFKS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2957g00002 359 Gene3D - 82 200 - -
Vium2957g00002 359 SUPERFAMILY Cyclin-like 184 294 IPR036915 -
Vium2957g00002 359 Gene3D - 72 287 - -
Vium2957g00002 359 PANTHER CYCLINS 66 290 IPR039361 -
Vium2957g00002 359 SMART Cyclin_C_2 202 325 IPR004367 -
Vium2957g00002 359 CDD CYCLIN_AtCycD-like_rpt1 99 197 - -
Vium2957g00002 359 Pfam Cyclin, C-terminal domain 203 293 IPR004367 -
Vium2957g00002 359 FunFam D6-type cyclin 196 287 - -
Vium2957g00002 359 SUPERFAMILY Cyclin-like 58 199 IPR036915 -
Vium2957g00002 359 ProSitePatterns Cyclins signature. 100 131 IPR006671 -
Vium2957g00002 359 SMART cyclin_7 105 193 IPR013763 -
Vium2957g00002 359 Pfam Cyclin, N-terminal domain 72 199 IPR006671 -
Vium2957g00002 359 CDD CYCLIN_AtCycD-like_rpt2 203 289 - -
Vium2957g00002 359 FunFam D2/4-type cyclin 82 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2957g00002 Vium-Chr2957 14156 16739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2957g00002 11 270 Core Cell Cycle Gene Families AT5G65420 49.808 1.34e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2957g00002 K18810 - gmx:100800570 507.294