Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2957g00001 ATGGAAGAGAGCATTGACCCTGCAACCTCAAGCCTTCTGTGTCTGGAAAACAATGACATGTGCTTTGATGATTTTGAATATAATGTTGCAGATGAGTCTCCTTCCTGGGACCACAAAAATCCTAACTTTAACAATCAATGTCTGATTGAGGACAATCTTGGATCGGAACATGTATTGGATTCTCCTGTACTGAGTGATGAAATTGTTTTGGGTTTGATTGGGAAGGAGAGGGAACATTTGCCCCGGGATGATTACCTCGAGAGGCTGCTCGGTGGGGACTTGGAATTGAGTGTTAGGAGGAGGCAGGCTCTTGATTGGATTTGGAAGGCTCATGCACACTATGACTTTGGACCCTCTAGCTTATGTCTATCTGTGAATTACTTAGATCGGTTTCTATCGGTGTATGAATTACCATTTGCTGGTCAGGGAGGCAACAGTTGGAGTGCACAATTGTTAGCTGTGGCATGTCTGTCAATTGCTGCTAAAATCGATGAGATTAAAGTGCCATCTTGTATAGATATACAGGTTGGAGAACCTAAGTTTCTATTTGAAGCTAAAACCATTCAAAGAATGGAACTACTGGTATTAAGCACATTGAAATGGAAAATGCAAGCTTTAACTCCATTTTCCTTCGTAGACTACTTCATCAAGAACATCACCTGTGACCAACTTCTAGTAAAGTCATCCATTCTGAGATCAGTTGGGCTCATTTTTGACATAATTAGATGTATCAATTTCTTGGAATTCAAGCCTTCTGAAATTGCCGCAGCCGTGGCAATTTCTGTGTCAAGGAAATTGCAAGCAGAAGAGATTGATGAGGCCTTAACATGTTTTGTCACTGTAGGAAAGGAAAGAATTTTGAAGTGTCTTGAACTGATTAGAGATTTGCCCTTGATCCAAGCTTCTACTAATTTGGGCAACAACTTAGCACCATTGGTACCTCAAAGCCCTATTGGAGTGCTGGATGCTGCATGCTTGATCTCTATAAATGATGAGTTAACATTTGGATTATCTACAGATTATTCGCTTGATACTCCAAATTCGAAGAGGATGAAAACTTCTGACCCTCTTGATAGGACTTTCAAGTCCTGA 1092 0.4075 MEESIDPATSSLLCLENNDMCFDDFEYNVADESPSWDHKNPNFNNQCLIEDNLGSEHVLDSPVLSDEIVLGLIGKEREHLPRDDYLERLLGGDLELSVRRRQALDWIWKAHAHYDFGPSSLCLSVNYLDRFLSVYELPFAGQGGNSWSAQLLAVACLSIAAKIDEIKVPSCIDIQVGEPKFLFEAKTIQRMELLVLSTLKWKMQALTPFSFVDYFIKNITCDQLLVKSSILRSVGLIFDIIRCINFLEFKPSEIAAAVAISVSRKLQAEEIDEALTCFVTVGKERILKCLELIRDLPLIQASTNLGNNLAPLVPQSPIGVLDAACLISINDELTFGLSTDYSLDTPNSKRMKTSDPLDRTFKS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2957g00001 363 SMART cyclin_7 105 197 IPR013763 -
Vium2957g00001 363 SUPERFAMILY Cyclin-like 58 203 IPR036915 -
Vium2957g00001 363 Gene3D - 82 204 - -
Vium2957g00001 363 Gene3D - 72 291 - -
Vium2957g00001 363 FunFam D6-type cyclin 200 291 - -
Vium2957g00001 363 CDD CYCLIN_AtCycD-like_rpt1 99 201 - -
Vium2957g00001 363 FunFam D6-type cyclin 82 199 - -
Vium2957g00001 363 Pfam Cyclin, C-terminal domain 207 297 IPR004367 -
Vium2957g00001 363 SMART Cyclin_C_2 206 329 IPR004367 -
Vium2957g00001 363 SUPERFAMILY Cyclin-like 188 298 IPR036915 -
Vium2957g00001 363 PANTHER CYCLINS 66 294 IPR039361 -
Vium2957g00001 363 ProSitePatterns Cyclins signature. 100 131 IPR006671 -
Vium2957g00001 363 Pfam Cyclin, N-terminal domain 72 203 IPR006671 -
Vium2957g00001 363 CDD CYCLIN_AtCycD-like_rpt2 207 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2957g00001 Vium-Chr2957 14156 16743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2957g00001 11 274 Core Cell Cycle Gene Families AT5G65420 49.057 3.32e-78 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2957g00001 K18810 - gmx:100800570 501.516