Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2956g00001 ATGGATGCAATGGAGAACTATTATTATAGCCAGAGAGACACAATGGCAGAGGAAGCGTTTGATTTGCCACCAGGGTTCAGGTTCCATCCCACGGATGAAGAACTCATCACTCATTACCTCTCACAGAAGGTTCTTGACAACTGCTTCTGCTCTAGGGCCATTGGAGAGGCTGATTTGAACAAGTGCGAGCCATGGGATTTGCCTTGTATGGCAAAAATGGGTGAAAAGGAGTGGTATTTTTTCTCCATGAGGGACAGAAAATACCCAACTGGGCAAAGGACTAATAGAGCCACCGGTGCTGGTTACTGGAAGGCCACGGGCAAAGACAAAGAGATATACAAGGCAAAGAAACTCATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCGAGTGGTGAAAAAACCAACTGGGTCATGCATGAATACAGATTAGAAGACGATCATTCTATGCACAATCCACACAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTTGAGAAGACCAACTGTGGGAAGAAAATGCAGATTTCTGGTTTGGTGAGGATGAGTTCCTTTGGGAAGGAGATGCCTTCATTGATGGATTCTTCTCCATACAACACGAGTGAAGCAAAACCTGTTTTGGGGGAATCATCACATTTGTCATCAGATCGAAACCAGAGCGATGAAAACATAGCTGAGAGCTTAGAAACTCTGATGATGGCATCTTCATCTTCGTATTCTTCAAACCCCTTTGATGTTTCCCCTGCTTCTTGGAGTGTGCCCCACCAATCCCTCCAAGCTGGGAACTCAAACTATTCCATGGATGAGGAACAACAGTCCATGTTGGGGATGCTGATTGAAAACCATGGATCAAGCACAACCCTAAGAACTCATAAAGCACTGGATAATGATTTTGATGCTGACACTTCCTCTCTCATCTACAATGATGAAATCTTTCACAGATCATTCGGGAACCAGGAATATTCATCACCTTCTCTGTGGGGATTCTAA 1005 0.4418 MDAMENYYYSQRDTMAEEAFDLPPGFRFHPTDEELITHYLSQKVLDNCFCSRAIGEADLNKCEPWDLPCMAKMGEKEWYFFSMRDRKYPTGQRTNRATGAGYWKATGKDKEIYKAKKLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLEDDHSMHNPHKKAMNDWAICRIFEKTNCGKKMQISGLVRMSSFGKEMPSLMDSSPYNTSEAKPVLGESSHLSSDRNQSDENIAESLETLMMASSSSYSSNPFDVSPASWSVPHQSLQAGNSNYSMDEEQQSMLGMLIENHGSSTTLRTHKALDNDFDADTSSLIYNDEIFHRSFGNQEYSSPSLWGF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2956g00001 334 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Vium2956g00001 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 259 - -
Vium2956g00001 334 SUPERFAMILY NAC domain 15 172 IPR036093 GO:0003677|GO:0006355
Vium2956g00001 334 Pfam No apical meristem (NAM) protein 23 147 IPR003441 GO:0003677|GO:0006355
Vium2956g00001 334 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Vium2956g00001 334 MobiDBLite consensus disorder prediction 196 225 - -
Vium2956g00001 334 FunFam NAC domain-containing protein 100-like 31 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2956g00001 Vium-Chr2956 18885 20519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2956g00001 21 330 NAC Transcription Factor Family AT5G07680 51.104 3.37e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2956g00001 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2956g00001 - - vun:114181690 560.451