Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2950g00007 ATGGGGAGGAAGAAGCCGACTGCGAGAGACGAGGAGAACGCGTCGCAGCAAGGCGGTGGCGGGAAATCTAAGAAGAAGGCCGTGGTCATCGACGACGATGAGTATTCCATTGGAACAGAGCTCTCTGAGGAGCCGGCGCTGGAAGAGAAACCCGCTGCGGCGGGGAAGAAGAAAAGTAAGAAAGGCAATGCTAAAAGTAAGAGTAACGATGATGATGTTGATGATGACGAAGATGTGCCTGAAGTTGTGTTTGCTGGGAAGAAGAAGGGGAAAAACAAGAAAGGCGGTGGGAGCAGTGCGTTTACTGCATCTGGCTTTAGTTTGCTTGGTGATGAGGAAGGTGACGAAGAAGATAAGTCTGAAGAGGATGGACCTGCGGTTAGTTTTTCGAGTAAGAAGGCATCGAACAAAGGAGGCGGTAGTTTGTTCAATGCATCAGCTTTTGATGCTATCGACGATGATGCTGGTGGTGAGGAGGAGGAGGAGGAGGATGAGCCGGTGGTTAGTTTTATTGGAAAGAAAAAGTCCTCGAAGGTTTCGAAGAAAAGCGGTGGTAGTTCGTTCGCTGCCTCGGCTTTTGATGCCATTGATGATGGTGGGGATGGTGAGGTGGCAGATGATAAGAATAATGATTTTGATGACGATGAACCTGTTATTGCTTTCACGGGGAAGAAGAAGTCTTCGAAAGGCAGTAAAAAGGGTGGTGCTGTGTTTTCTGCCTCTGTTCTCACTGAAATCGACGATGAAGAGGAGAAGGAGGATGGTGGCGGTGATGATGACGATGACATTGGACCAATTACTTTCTCTGGCAAGAAGAAGAAGTCTTCCAAGAAAGCTGCAAGTTCCGGTGGCAAAGCTGTTTCTGTTGAGGATGATGTTTCTGTACCCGAGTCTGGTAAGGATGGTGATGACACGGATGAGGATGATGTTTCTTTAGTTTCGTTTTCAGGTAAAAAGAAGTCCTCTAAAAAGAAGGGCAGTAGCACTGCTGCCAAAGGGAGTGAGGAAAATGTGGATGTAGTTGAGCCTGAGGCACCCACTATTGGTAGTGTTGATGCTAGCAACAGCAATGTAAATAAGAGTGAAGGAGTTGCTGAAACTTCCAAAAATAAGAAGAAGAATAAGAAAAAGAGTGGAAGAACTGCTCAAGAGGAGGAAGATTTGGATAAGCTTCTTGCAGAGCTCGGTGAGGCTCCTGTACCAAAACCAACTGCTTCTGCACCACAGGATGATAAAGTTCAGCCTACTCCTGAAGTAGGTCCTGCTGTTGCTGATGCTTCTGGGGAAAAGGAGGGTGAAGAGGAGGTGGTAGAATCAGCTGCTGCAAAGAAGAAGAAGAAGAAAAAGGAAAAGGAAAAGGAGAAGAAGGCAGCTGCCGCTGCCGCAGCAGCAGCAGGAAGTGCACCAGAAAAAGAATTAGCCGAAGTTAAAGCTGAGGCAATTGAACCAAAGAAGAATGATTCAAAGGCTAAGGCAGCTGATAAGAAAGTGCCAAAGCATGTTAGAGAGATGCAAGAGGCACTAGCTCGAAGAAAAGAGGCTGAAGAAAAGAAGAAACGAGAAGAGGAAGAGAGGTTAAAGAAGGAAGAAGAGGAGCGACGGAGGCAAGAGGAACTTGAGAGACAGGCAGAAGAAGCTAAACGCAGAAAGAAGGAAAGAGAAAAGGAAAAACTCCTGAAAAAGAAGCAAGAAGGTAAATTATTAACTGGTAAGCAGAAAGAAGAAGCACGTCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACTGGGGGTCTGACTCTCCCTTCTGGGGACTCTGGTGCTCCAGCTAAAAAACCCATATACCAGACAAAGAAGGCAAAACCAAATAATAGAAATCAGAATGGTGCTGCTGCTCAGGCAGCTGAAATTGTCGAAGCGAAGGAGACTGCTACTGATGTAGTTTCTGAGGAACCAGTAAATATTGAAGAAGTGGAGTCGATTCAGGTGGATGACAAAGTTGAACTTCCTGTCACTGCTGAAGATGATGTGGTGGAAGATGATGAAGATGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCCAAAGGTGCATTTGCAGACGAAGAGGCTGACTCCGAACCTAAACCTGTTATCAAAAAGGAGATTAAAAATGCCATGCCAACTCAGAATGCCGGGGCTGCTAGTGCAACTGTTTCTGGGCCTTTGACTGATGAAACTGAAAATGGAAAGCAAGCTAATGCTGTGGTTACAGACAGAAATAAGAAGCATGATTCTGACTTGAATAGGTCAAAAAAATCTGCTGCCCCTCCTCAGCCTAATGATGAAAACCTCCGCTCCCCAATTTGCTGTATCATGGGGCACGTGGATACTGGGAAGACCAAGCTGTTGGATTGTATTCGAGGTACTAATGTTCAGGAGGGTGAGGCTGGAGGTATCACACAACAGATTGGTGCAACATACTTTCCTGCTGAGAACATACGTGAAAGAACAAAGGAACTGAAAGCTGATGCCAAGTTGAAAGTTCCTGGTCTACTGGTTATTGACACCCCTGGGCACGAGTCGTTTACTAACTTGAGGTCTCGGGGTTCAGGCCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAGTCACTCAATCTATTAAAAATGAGGAATACAGAATTCATTGTTGCCTTAAATAAGGTTGACAGGCTTTATGGATGGAAAACATGTCGCAATTCCCCAATTGTCAAAGCACTGAAGCAGCAGACTAAGGATGTTCAAAATGAGTTCAATATGAGGCTCACTCAGATTGTTACTCAATTCAAAGAACAAGGGATGAATACCGAGTTGTACTATAAAAACAAAGAAATGGGAGAAACATTCAGTATTGTGCCTACAAGTGCAATAAGTGGCGAAGGAATTCCCGATTTGTTATTACTTTTGGTTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTAGAGGTTAAGGTTGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGCGGAATGCAGGGCCCAATTGTTACCACAATTCGAGCTTTATTGACTCCTCATCCAATGAAGGAACTTCGTGTCAAGGGAACATATCTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACTGCCCAGGGCCTTGAGCATGCCATTGCTGGCACTGGGTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATATCAAAGAAGCAGCAATGGAAGATATGCGATCAGTTATGAGCAGGATTGACAGGACCGGTGAAGGTGTTTGTGTACAGGCATCTACCCTTGGTTCCTTAGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTTAGTATCCCTGTTAGTGGTATAAGCATTGGTCCTGTTCACAAAAAAGATGTAATGAAGGCCAGCGTAATGCTTGAAAAAAAGCGAGAGTATGCAGCTATATTGGCATTTGATGTCAAAGTTACACCTGAGGCTAGGGAACTGGCAGATGAATTGGGTGTGAAGATATTTATTGCTGATATCATTTATCATCTGTTTGATCAATTTAAAGCGTATATTGACAACATTAAAGAGGAGAAAAAGAAAGAAGCTGCTGATGAGGCAGTCTTCCCATGCGTTTTTAAAATCTTACCAAATTGCATTTTCAACAAGAAGGACCCAATTGTTTTGGGAGTTGATATTCTTGAAGGCATTGCAAAGATTGGGACTCCAATTTGCATTCCTTCCAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAAAATAACCACAAACCTGTTGAATATGCCAAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATCCTGAAGAGCAACAAAAAATGTTTGGGAGACATTTTGAGATCGACGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGACATTCTCAAAACTAATTATCGGGATGATCTATCCATGGAGGAATGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4104 0.4342 MGRKKPTARDEENASQQGGGGKSKKKAVVIDDDEYSIGTELSEEPALEEKPAAAGKKKSKKGNAKSKSNDDDVDDDEDVPEVVFAGKKKGKNKKGGGSSAFTASGFSLLGDEEGDEEDKSEEDGPAVSFSSKKASNKGGGSLFNASAFDAIDDDAGGEEEEEEDEPVVSFIGKKKSSKVSKKSGGSSFAASAFDAIDDGGDGEVADDKNNDFDDDEPVIAFTGKKKSSKGSKKGGAVFSASVLTEIDDEEEKEDGGGDDDDDIGPITFSGKKKKSSKKAASSGGKAVSVEDDVSVPESGKDGDDTDEDDVSLVSFSGKKKSSKKKGSSTAAKGSEENVDVVEPEAPTIGSVDASNSNVNKSEGVAETSKNKKKNKKKSGRTAQEEEDLDKLLAELGEAPVPKPTASAPQDDKVQPTPEVGPAVADASGEKEGEEEVVESAAAKKKKKKKEKEKEKKAAAAAAAAAGSAPEKELAEVKAEAIEPKKNDSKAKAADKKVPKHVREMQEALARRKEAEEKKKREEEERLKKEEEERRRQEELERQAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGLTLPSGDSGAPAKKPIYQTKKAKPNNRNQNGAAAQAAEIVEAKETATDVVSEEPVNIEEVESIQVDDKVELPVTAEDDVVEDDEDDEWDAKSWDDVNLNAKGAFADEEADSEPKPVIKKEIKNAMPTQNAGAASATVSGPLTDETENGKQANAVVTDRNKKHDSDLNRSKKSAAPPQPNDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNSPIVKALKQQTKDVQNEFNMRLTQIVTQFKEQGMNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDIKEAAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKKEAADEAVFPCVFKILPNCIFNKKDPIVLGVDILEGIAKIGTPICIPSREFIDIGRIASIENNHKPVEYAKKGQKVAIKIVGSNPEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDDLSMEEWRLVVKLKNLFKIQ 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2950g00007 1367 Gene3D - 769 997 IPR027417 -
Vium2950g00007 1367 Coils Coil 430 462 - -
Vium2950g00007 1367 SUPERFAMILY Translation proteins 1234 1366 IPR009000 -
Vium2950g00007 1367 CDD aeIF5B_II 999 1109 - -
Vium2950g00007 1367 FunFam eukaryotic translation initiation factor 5B 998 1117 - -
Vium2950g00007 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 775 1066 IPR027417 -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 349 364 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 427 445 - -
Vium2950g00007 1367 FunFam Eukaryotic translation initiation factor 5B 1117 1223 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 668 683 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 378 393 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 152 166 - -
Vium2950g00007 1367 FunFam Eukaryotic translation initiation factor 5B 1230 1367 - -
Vium2950g00007 1367 PRINTS GTP-binding elongation factor signature 843 853 IPR000795 GO:0003924|GO:0005525
Vium2950g00007 1367 PRINTS GTP-binding elongation factor signature 895 904 IPR000795 GO:0003924|GO:0005525
Vium2950g00007 1367 PRINTS GTP-binding elongation factor signature 779 792 IPR000795 GO:0003924|GO:0005525
Vium2950g00007 1367 PRINTS GTP-binding elongation factor signature 859 870 IPR000795 GO:0003924|GO:0005525
Vium2950g00007 1367 NCBIfam small GTP-binding protein domain 780 906 IPR005225 GO:0005525
Vium2950g00007 1367 Coils Coil 497 564 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 244 261 - -
Vium2950g00007 1367 Pfam Elongation factor Tu GTP binding domain 779 987 IPR000795 GO:0003924|GO:0005525
Vium2950g00007 1367 Pfam Elongation factor Tu domain 2 1014 1089 IPR004161 GO:0005525
Vium2950g00007 1367 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 775 991 IPR000795 GO:0003924|GO:0005525
Vium2950g00007 1367 CDD IF2_eIF5B 778 988 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 715 774 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 719 746 - -
Vium2950g00007 1367 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1100 1229 IPR036925 -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 1 686 - -
Vium2950g00007 1367 Gene3D Translation factors 1230 1367 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 472 582 - -
Vium2950g00007 1367 Gene3D Translation factors 998 1118 - -
Vium2950g00007 1367 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 483 1364 IPR015760 -
Vium2950g00007 1367 CDD IF2_aeIF5B_IV 1238 1333 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 747 761 - -
Vium2950g00007 1367 Gene3D - 1119 1223 IPR036925 -
Vium2950g00007 1367 Pfam Translation-initiation factor 2 1104 1216 IPR023115 -
Vium2950g00007 1367 FunFam Eukaryotic translation initiation factor 5B 769 997 - -
Vium2950g00007 1367 MobiDBLite consensus disorder prediction 653 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2950g00007 Vium-Chr2950 67340 75758 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2950g00007 1 221 Eukaryotic Initiation Factors Gene Family AT1G76810 38.525 3.73e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2950g00007 K03243 - gmx:100814875 1757.65