Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2950g00003 ATGGATCACAGTGCAGATGCTCAACGCACAGACTTGATGACCATAACCCGTTTCGTGCTGAACGAACAGTCGAAGCAACCTGAGGCTCGTGGCGATTTCACAATCTTGCTCAGTCACATTGTTCTTGGCTGCAAGTTCGTTTGTTCTGCTGTTAACAAGGCGGGTCTTGCTAAGCTTATTGGGCTTGCTGGAGAGACAAATGTCCAGGGTGAGGAGCAAAAGAAACTGGACGTCCTTTCCAATGATGTCTTTGTCAAGGCTCTGGTCAGCAGTGGACGAACATGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAGCCTTCTAAGCGTGGAAGGTACATAGTTGTTTTTGATCCGCTGGATGGTTCCTCTAACATCGATTGTGGTGTTTCTATTGGCACAATTTTTGGGATTTATTTGGTGAAAGAAAACCGTGAACCAACCATAGAAGATGTTTTGCAACCCGGGAAGAACATGTTGGCTGCTGGTTATTGTATGTATGGAAGCTCTTGCACGTTTGTGCTAAGCACCGGAAGTGGCGTGAATGGTTTCACCCTTGATCCATCTCTTGGAGAGTTCATTCTTACTCACCCTGACATCAAGGTCCCGAAGAAAGGAAAAATATATTCAGTGAACGAAGGAAATGCTAAAAATTGGGATGGTCCTACTAGCAAGTATGTGGAAAACTGCAAGTTTCCAAAAGACGGTTCATCACCAAAGTCCTTAAGATATGTTGGAAGCATGGTAGCTGATGTTCACCGCACATTTCTTTATGGAGGTATCTTTCTGTACCCGGCTGATAAAAAGAGTCCAAATGGGAAACTTCGTGTTCTCTACGAAGTCTTCCCAATGTCATTCTTGATGGAGCAGGCAGGAGGGCAGGCTTTCACTGGCAAGCAAAGGGCACTTGATTTGGTTCCAACAAAGTTGCACGAGAGATCTCCCATATTCCTTGGTAGCTATGAGGATGTAGAGGAAATCAAAGCCCTTTATGCTGCTGATCAAAAATTGGAATGA 1026 0.4483 MDHSADAQRTDLMTITRFVLNEQSKQPEARGDFTILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNDVFVKALVSSGRTCILVSEEDEEATFVEPSKRGRYIVVFDPLDGSSNIDCGVSIGTIFGIYLVKENREPTIEDVLQPGKNMLAAGYCMYGSSCTFVLSTGSGVNGFTLDPSLGEFILTHPDIKVPKKGKIYSVNEGNAKNWDGPTSKYVENCKFPKDGSSPKSLRYVGSMVADVHRTFLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQAFTGKQRALDLVPTKLHERSPIFLGSYEDVEEIKALYAADQKLE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2950g00003 341 PIRSF FBPtase 9 339 IPR028343 GO:0042132
Vium2950g00003 341 Gene3D - 204 341 - -
Vium2950g00003 341 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 13 336 IPR000146 GO:0005975|GO:0016791
Vium2950g00003 341 ProSitePatterns Fructose-1-6-bisphosphatase active site. 276 288 IPR020548 GO:0005975|GO:0042578
Vium2950g00003 341 Gene3D - 4 203 - -
Vium2950g00003 341 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 13 201 IPR033391 -
Vium2950g00003 341 PRINTS Fructose-1,6-bisphosphatase signature 38 65 IPR028343 GO:0042132
Vium2950g00003 341 PRINTS Fructose-1,6-bisphosphatase signature 212 239 IPR028343 GO:0042132
Vium2950g00003 341 PRINTS Fructose-1,6-bisphosphatase signature 310 335 IPR028343 GO:0042132
Vium2950g00003 341 PRINTS Fructose-1,6-bisphosphatase signature 186 209 IPR028343 GO:0042132
Vium2950g00003 341 PRINTS Fructose-1,6-bisphosphatase signature 155 178 IPR028343 GO:0042132
Vium2950g00003 341 PRINTS Fructose-1,6-bisphosphatase signature 75 101 IPR028343 GO:0042132
Vium2950g00003 341 FunFam Fructose-1,6-bisphosphatase, cytosolic 4 203 - -
Vium2950g00003 341 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 205 334 IPR044015 -
Vium2950g00003 341 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 3 335 IPR000146 GO:0005975|GO:0016791
Vium2950g00003 341 PIRSF FBPtase_SBPase 9 340 IPR000146 GO:0005975|GO:0016791
Vium2950g00003 341 CDD FBPase 20 334 IPR000146 GO:0005975|GO:0016791
Vium2950g00003 341 SUPERFAMILY Carbohydrate phosphatase 8 334 - -
Vium2950g00003 341 FunFam Fructose-1,6-bisphosphatase class 1 204 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2950g00003 Vium-Chr2950 38750 42502 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium2950g00003 FBPase 1.2e-81 CL0171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2950g00003 K03841 - gmx:100815943 652.129