Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2950g00002 ATGGAAGGGAATTTGCCCCAGGGAGGTATAATTCAAGGTGGGACGTCTTTCGGTGGCTTTGATTTGCCGGGATCAATTCGGGTTCAGCATCAAGCACAACATCCACATGCCATGCACCAACATCAAACTCATCCGCGTCAAGGATCTTCTGTACATTCCACAGTTCATGATGTTTTCCCTCTTACAATGGGAACCCTGCAGAACTGTGACCAAACTATTTCAATGACAGAGTTTAGTAAAGAAAACAGAAGTAAAAACTCAGCGAGTGAGGAAGACGAGCCGAGCTTTACCGAGGATGGTGTTGATTGTCACCATGAAGCTAGTAGAGGGAAGAAAGGATCACCTTGGCAGCGGGTTAAGTGGACTGATAAGATGGTAAGACTTCTGATAACAGCTGTTTCTTATATTGGCGAGGATGTGACTGTTGATGGCGGTGGCAGTGGAAGAAGGAAGTTTGCAGTATTACAGAAGAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAGAGGGGTTATCACGTTTCACCTCAGCAATGCGAGGATAAATTCAATGATCTCAATAAAAGATACAAAAAGCTTAACGATATGCTTGGGAGAGGCACTTCTTGTCAGGTTGTTGAAAATCCCGCTCTGTTGGATGTGATAGATTTTCTTTCTGATAAAGAAAAGGACGATGTTCGAAAAATATTAAGCTCAAAACACCTGTTCTATGAGGAGATGTGTTCTTACCATAATGGTAACAGGTTGCATTTACCCCATGATCCTGCATTGCAACGTTCACTCCAGTTAGCGCTGCGAAATAGGGATGATCATGACAACGATGATATGAGAAGGTCCCATCATGACGATCACGGCGAAGATGATCCAGATGTGGAAATTGATGATCATGATGATTTTGAAGAGAATTGTGCTTCTCATGGTGATAGTAGAGGAATATATGCACCATTAGGTGGACCTGTGAAGAAACTGAAACAAGGCCAAGGCCAAGAAGATGGTAATACTTTTGGCAATTCTCTAAATTGTCAGGACTACAACAGAAGTTCGTATCCCCATGGACAGATGGTCCAATCTGATGTGAATCAAGGTTTACCTGAAAGCATGAGAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCGCTCACTTCAGTTAGAGGAACAAAAGATACAAATTCAGGTTGAGATGCTGGAACTAGAGAAACAGAGATTCAAGTGGCAGAGGTTTAGTAAGAAAAAGGATCGGGAGTTGGAGAAGCTAAGTCTAGAAAATGAAAGAATGAAGCTTGAAAATGAACGTATTGCTTTAGAACTTAAGCGAAAGGAAATGAGCACTGGCTTTAAATAG 1347 0.4232 MEGNLPQGGIIQGGTSFGGFDLPGSIRVQHQAQHPHAMHQHQTHPRQGSSVHSTVHDVFPLTMGTLQNCDQTISMTEFSKENRSKNSASEEDEPSFTEDGVDCHHEASRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTVDGGGSGRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDFLSDKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDNDDMRRSHHDDHGEDDPDVEIDDHDDFEENCASHGDSRGIYAPLGGPVKKLKQGQGQEDGNTFGNSLNCQDYNRSSYPHGQMVQSDVNQGLPESMRAAWLQKQWVESRSLQLEEQKIQIQVEMLELEKQRFKWQRFSKKKDRELEKLSLENERMKLENERIALELKRKEMSTGFK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2950g00002 448 MobiDBLite consensus disorder prediction 1 53 - -
Vium2950g00002 448 MobiDBLite consensus disorder prediction 83 115 - -
Vium2950g00002 448 Coils Coil 410 442 - -
Vium2950g00002 448 Gene3D - 121 193 - -
Vium2950g00002 448 MobiDBLite consensus disorder prediction 78 115 - -
Vium2950g00002 448 MobiDBLite consensus disorder prediction 269 338 - -
Vium2950g00002 448 MobiDBLite consensus disorder prediction 35 53 - -
Vium2950g00002 448 PANTHER F16F4.11 PROTEIN-RELATED 1 445 - -
Vium2950g00002 448 Pfam Myb/SANT-like DNA-binding domain 118 244 IPR044822 -
Vium2950g00002 448 Coils Coil 382 402 - -
Vium2950g00002 448 MobiDBLite consensus disorder prediction 269 288 - -
Vium2950g00002 448 FunFam Sequence-specific DNA binding transcription factor 121 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2950g00002 Vium-Chr2950 31340 33604 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium2950g00002 Myb_DNA-bind_4 6.2e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2950g00002 - - gmx:100812134 793.112