Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2950g00001 ATGCTCGGGGACTCAGCTGTGTTGGGAGCGGGAGGTGGAAGTGGCGGCGGAGAAGGTGGCGCCTCCGCCGATGCAGTGGCCGGGGTCAGTCATGACGGGGCGGTGGCAGCTAGCGGAGGCGGTGGTGGAGTTGGATCAAATTCAGGGGACGACGAAAGGGGAAGAATCGAAGAGGGAGAACGTAGCTTCGGTGGTAACCGGTGGCCCCGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTTGGGTATCACAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAAAGAACCAAAGAAGGTCGAAGTGGGAAGCAAGATGGAAAAACATATCGTTTCTTTGATCAACTACAAGCCCTTGAGAATCACACTCCAACACCCCACTCTCCCAAACCATCACCTAAACTACCACAATCAGCACCATCAAGAGTCATTCCAGCAACAGCTGCATCATTGTCACTACCAATTGCAACAGCATCAACAACTGCTTCATCCTTGTCACTTCCAATTCCAACCACAATATTAACAACAGTACCAATGCAGCCAATACTGTCCAACACCACTCTCACTAGTACTGTCCCCCATATCACTGTTCCATCAACAACAACACTCCCTATAACCATACCCCAGCCCATGCTCACTACCCCATCAATACATCTCTCAACTCCTTCTTACCCTCCAACAAACCCTACCACCAACACAGCCCCACCACCTTCTTTCCCCACGCTCCCCACCGACACCTTCTCCAATTCTAGCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAGGTAGGCGCAAAAGGAAGCGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATCCAGAAACAAGAGGATCTACAAAAGAAGTTCCTCGAAGCCATAGAGAAACGAGAACACGAAAGAATAGCAAGAGAAGAAGCATGGAGAGTCCAAGAGATGCAAAGAATCGATAGAGAGAGAGAAATCCTCGCCCAGGAAAGATCCATAGCCGCAGCCAAAGACGCTGCCGTCATGTCATTCCTTCAAAAAGTAGCCGAACAACAAAACCTCGGTCAAGCATTAAACAGCATCAACCTCGTACAACAACCACCAACGCAACAACCTCAACCACCACTGCAACAATTGCCACCATCTAGTGTAGCTCCATCTGCTTTGCAACAACCACTGCCCGCGGTTGTTTCACAACCATTGGTGTTTCCAGTGGTCTCACATGTGACCAACATGGAGATAGTGAAAGTTGACAACAACAACAATAATAGTAGTGAGAATTTCAGGCCATCGAGTTCCTCGAGGTGGCCAAAGGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAACCTGGATGCAAAGTATCAGGAGAACGGACCAAAGGGTCCTCTATGGGAGGAGATCTCATCCTCGATGAGGAAGCTCGGGTACAACCGAAACGCGAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCGGAGACCGGAAGATTCGAAAACATGCCCTTATTTCCACCAGCTGGACGCGCTGTACAGGGAGAAGAGCAAGGTGGAGGGAGTGGCGGCGGTGAAGCCGGAAAGCACGGTGGCGCCGCTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGGAGGAAACGATGAGAGATAGGGACATCAGAATGGAGGACGTGGAGAACGAAGATGATGAGTACGAGGAAGAGAGAGAGGGAGAGGGGGAGGGAGAGGAAGAAGAAGATGACGAAGAGGATGAAGAAGGTGGTGGTGATGGGAAATATGAGATAGTGGCGAACAAAACGAGTGGTGGTTCAGTTGCGGCATCGACAGAATAG 1959 0.5028 MLGDSAVLGAGGGSGGGEGGASADAVAGVSHDGAVAASGGGGGVGSNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHTPTPHSPKPSPKLPQSAPSRVIPATAASLSLPIATASTTASSLSLPIPTTILTTVPMQPILSNTTLTSTVPHITVPSTTTLPITIPQPMLTTPSIHLSTPSYPPTNPTTNTAPPPSFPTLPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIQKQEDLQKKFLEAIEKREHERIAREEAWRVQEMQRIDREREILAQERSIAAAKDAAVMSFLQKVAEQQNLGQALNSINLVQQPPTQQPQPPLQQLPPSSVAPSALQQPLPAVVSQPLVFPVVSHVTNMEIVKVDNNNNNSSENFRPSSSSRWPKVEVQALIKLRTNLDAKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKSKVEGVAAVKPESTVAPLMVRPEQQWPPQEETMRDRDIRMEDVENEDDEYEEEREGEGEGEEEEDDEEDEEGGGDGKYEIVANKTSGGSVAASTE 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2950g00001 652 Pfam Myb/SANT-like DNA-binding domain 466 553 IPR044822 -
Vium2950g00001 652 Pfam Myb/SANT-like DNA-binding domain 66 152 IPR044822 -
Vium2950g00001 652 MobiDBLite consensus disorder prediction 575 652 - -
Vium2950g00001 652 MobiDBLite consensus disorder prediction 276 291 - -
Vium2950g00001 652 CDD GT1 466 531 - -
Vium2950g00001 652 SMART sant 464 526 IPR001005 -
Vium2950g00001 652 SMART sant 64 126 IPR001005 -
Vium2950g00001 652 MobiDBLite consensus disorder prediction 154 175 - -
Vium2950g00001 652 Gene3D - 68 129 - -
Vium2950g00001 652 Gene3D - 468 529 - -
Vium2950g00001 652 FunFam Trihelix transcription factor GT-2 468 529 - -
Vium2950g00001 652 MobiDBLite consensus disorder prediction 397 419 - -
Vium2950g00001 652 MobiDBLite consensus disorder prediction 261 275 - -
Vium2950g00001 652 ProSiteProfiles Myb-like domain profile. 66 124 IPR001005 -
Vium2950g00001 652 ProSiteProfiles Myb-like domain profile. 466 524 IPR001005 -
Vium2950g00001 652 CDD GT1 66 131 - -
Vium2950g00001 652 MobiDBLite consensus disorder prediction 1 70 - -
Vium2950g00001 652 Coils Coil 590 610 - -
Vium2950g00001 652 FunFam Trihelix transcription factor GT-2 68 129 - -
Vium2950g00001 652 PANTHER FI21293P1 42 603 - -
Vium2950g00001 652 MobiDBLite consensus disorder prediction 50 65 - -
Vium2950g00001 652 Coils Coil 305 325 - -
Vium2950g00001 652 MobiDBLite consensus disorder prediction 599 631 - -
Vium2950g00001 652 MobiDBLite consensus disorder prediction 247 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2950g00001 Vium-Chr2950 9738 13032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2950g00001 57 583 Trihelix Transcription Factor Family AT1G76880 53.261 1.75e-162 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium2950g00001 Myb_DNA-bind_4 2.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2950g00001 - - pvu:PHAVU_007G079700g 917.531