Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00022 ATGGATCCAGCTTGCACGCCAACTGCTTCAGGAACCATCCTCCTCCTCCTCCTGTTGTGGTGCCTCTCTTTCCTTTCCACAGCAGACGATATTTATCATCCCACTGACCTCTTCAGCGTCAGCTGTGGCTCATCCACCAACTTCTCCACTCCCGACACTCGGAATTGGACTTCAGACAATCACTTCCTCTCTCCAACCAACCTATCAGTTTCTGCTCCTTCACTCACACAGTCTACCATCCAGGGTCCCTACACCCATGCTCGTCTCTCCTACTCACCATTCACTTACTCATTCCCTCTCACACAAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCAACTTCATACCAGAACTTTAATCGCTCCCTAGCCTCTTTCTCAGTCAAAGCAGGCCCCTACACCCTCCTTCAAGATTTCAATTCTTCCCTCAACGCCGATGCTGATGATGATCCTAGCCACCCTGACATCTTGCTCAAAGAGTATTGCATCAACCTTCAAGATGGTGACAAGCTCAACATAACCTTCCTTCCTAGCACCAGATATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCTCTTATCTCTACTACACCGATCCTGACGACTTCATGGAGCAACCGCAAATTGTTGCCACCGTCATGACCCCATATGTCATTAAGAACAAGTTTGCTCTCGAGACCATGTACAGGTTAGTCGCTTCCGGAATTGAAATCCCTTCCTCAGGGGACACAGGTATGCTCAGAACGTGGGAACCTGACATCAAGTACATAACTACTCAAAGTAGAGTATCAGTTTCTTATAGGAAAGATGAAAAGCTGACGTTCATTAAAAACTACACGGCACCAGATCAAGTGTACAAAACCGTTCGGAGTATGGGACTTAATGGCTCTATCAACATGGGTTTCAATCTTACATGGCAGCTTCCCGTTGATTCAGGCTTCTTCTACATGCTACGGTTGCACTTTTGCCAGCTTGATCCGGCGGTTAACTACCCTGGTGACCTGATTTTCAACATCTTCATAGCGGATCAGTTGGCTAGCGATCGGGCAGACGTTCTCATTTGGACTGATAATCGGAAGGGTGTAACGGTAGTTAAAGACTACGTAGTTTCGATACAAGGGAATCTTGACAAAACAAATGTATCAGTGAAACTGCATCCTCTGCCTGGAAGCCGGGGCAAAGACGCGGTTATCAACGCAATTGAAGTCTTTAAAATCAACAACTCAACAGGTAGTCTCGCTGGACAAAACCCAAACCTTCCTCCACAAAAGCCCAAGGTTCCCCTTAGCTCAAACAAGAGAACTAGCGTCATCACGAAAAGCCGAGAAGCCATACTAGGAGCAGTTGCAGGATTCCTTTTGCTCTCTTCTATTGTTGTTTTCTTCCTCATCAAATGCAAAAAGAATATCACCCTTGAAAGTGGTTCCAGCAAAAAAGGCGGAACTTCTCGCGGGGGTGGCTCGTCGCTGCCAACCAACCTCTGCCGCTACTTCTCCATAGCAGAAATCAGAGCCGCCACCAATAACTTCGACGAACAAATGGTGGTTGGCGTCGGAGGCTTCGGCAACGTGTACAAAGGCTACGTAGATGAGGGTTCAGTACCTGTTGCAATCAAAAGGCTCAAACCCGGTTCTCAGCAAGGTATGCAGGAGTTCATGAACGAAATCGAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGTTACGAGAACGGCGAGATGATACTTATTTATGATTTCATGGAACGCGGAACCCTCAGCGACCATCTCTACGGCTCTGACAATCAGTCCTTGACGTGGAAGCAAAGGGTCCAGATCTGCATAGGTGCCGCAGGAGGGCTCCACTATCTGCATACAGGTGCAAAGCACGTCATCATTCACCGTGATGTGAAGAGTACCAATATTTTATTGGATGAAAAATGGGTGGCCAAAGTTTCAGACTTCGGGTTATCCAGAATTGGGCCCACGAGTTCTTCAATGACCCATGTGAGTACCCAGGTGAAGGGCAGTATTGGGTATTTAGACCCGGAGTATTATAAACGACAGCGGTTGTCGGAGAAGTCTGACGTGTACTCGTTTGGGGTTGTGTTGTTGGAGGTATTGTGTGGGAGGCAGCCTTTGCTCCGTATGGTGGAGAAGCAACAGGTGTCTCTTGTTGATTGGGCAAAACATAGATATCAGAAGGGGTGTTTGGGTGAAATCGTGGATCCAGCACTGAAGGGTAAGATCACACCCCAGTGTTTGCAAAAATTTGGAGAGGTCGCAATGACCTGTTTGCTGGAGGATGGGACCCAAAGGCCTTCCATGAACGACATCATTGGAACGCTGGAGCTTGTTCTGCAGCTTCATGAAAGTGGTAATAGTGGAGTGATGATGGACACTGGTGGGGGTTACGAAGATAGTGAGGACATGTTTAGCAGCAGTCATAGTGGTGCAATAGAATTTACAGATTATAGTAATAGCAGTAGATTTAACACCGCGGGCATTTCAGATGATAGCTATGGGAGCAAGCAATCTGACAGGTTGCTACCTGAGAATGTATTCTCTGAGATTAAGGATCCAAAGGGACGATGA 2601 0.4725 MDPACTPTASGTILLLLLLWCLSFLSTADDIYHPTDLFSVSCGSSTNFSTPDTRNWTSDNHFLSPTNLSVSAPSLTQSTIQGPYTHARLSYSPFTYSFPLTQGPKFIRLFFYSTSYQNFNRSLASFSVKAGPYTLLQDFNSSLNADADDDPSHPDILLKEYCINLQDGDKLNITFLPSTRYSYAFINGIEIVSMPSYLYYTDPDDFMEQPQIVATVMTPYVIKNKFALETMYRLVASGIEIPSSGDTGMLRTWEPDIKYITTQSRVSVSYRKDEKLTFIKNYTAPDQVYKTVRSMGLNGSINMGFNLTWQLPVDSGFFYMLRLHFCQLDPAVNYPGDLIFNIFIADQLASDRADVLIWTDNRKGVTVVKDYVVSIQGNLDKTNVSVKLHPLPGSRGKDAVINAIEVFKINNSTGSLAGQNPNLPPQKPKVPLSSNKRTSVITKSREAILGAVAGFLLLSSIVVFFLIKCKKNITLESGSSKKGGTSRGGGSSLPTNLCRYFSIAEIRAATNNFDEQMVVGVGGFGNVYKGYVDEGSVPVAIKRLKPGSQQGMQEFMNEIEMLSQLRHLHLVSLIGYCYENGEMILIYDFMERGTLSDHLYGSDNQSLTWKQRVQICIGAAGGLHYLHTGAKHVIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTSSSMTHVSTQVKGSIGYLDPEYYKRQRLSEKSDVYSFGVVLLEVLCGRQPLLRMVEKQQVSLVDWAKHRYQKGCLGEIVDPALKGKITPQCLQKFGEVAMTCLLEDGTQRPSMNDIIGTLELVLQLHESGNSGVMMDTGGGYEDSEDMFSSSHSGAIEFTDYSNSSRFNTAGISDDSYGSKQSDRLLPENVFSEIKDPKGR 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00022 866 PANTHER OS03G0124300 PROTEIN-RELATED 14 473 IPR046957 GO:0004672
Vium2948g00022 866 MobiDBLite consensus disorder prediction 836 866 - -
Vium2948g00022 866 ProSitePatterns Protein kinases ATP-binding region signature. 519 542 IPR017441 GO:0005524
Vium2948g00022 866 FunFam receptor-like protein kinase FERONIA 477 589 - -
Vium2948g00022 866 ProSiteProfiles Protein kinase domain profile. 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2948g00022 866 FunFam Receptor-like protein kinase FERONIA 590 804 - -
Vium2948g00022 866 Gene3D Phosphorylase Kinase; domain 1 498 589 - -
Vium2948g00022 866 FunFam FERONIA receptor-like kinase 226 410 - -
Vium2948g00022 866 FunFam FERONIA receptor-like kinase 37 195 - -
Vium2948g00022 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vium2948g00022 866 Pfam Malectin-like domain 40 409 IPR024788 -
Vium2948g00022 866 Gene3D - 36 195 - -
Vium2948g00022 866 Gene3D - 226 411 - -
Vium2948g00022 866 MobiDBLite consensus disorder prediction 416 435 - -
Vium2948g00022 866 Gene3D Transferase(Phosphotransferase) domain 1 590 802 - -
Vium2948g00022 866 Pfam Protein tyrosine and serine/threonine kinase 518 784 IPR001245 GO:0004672|GO:0006468
Vium2948g00022 866 SUPERFAMILY Protein kinase-like (PK-like) 491 787 IPR011009 -
Vium2948g00022 866 SMART serkin_6 513 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2948g00022 866 CDD STKc_IRAK 528 786 - -
Vium2948g00022 866 MobiDBLite consensus disorder prediction 836 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00022 Vium-Chr2948 192939 195857 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00022 23 866 Receptor kinase-like Gene Family AT3G51550 45.708 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium2948g00022 Malectin_like 7e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00022 - - gmx:100814046 1159.05