Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00017 ATGGACACAAGTTGCACAAGAACAGCTTTAAGAACCATCTTCTTCCTCCTCCTGTGGTGCTGCCTCTCTTTCATTTCCATGGCAGACGTTATTTATCGTCCCACTGACCTCTTTAGCATCAGCTGTGGCTCATCCACCAACTTCTCCACTCCCGACACTCGGAATTGGACTTCAGACAATCACTTTCTCTCTCCAACCAACCTCTCAGTCGCTGCTCCTTCACTCACACCATCTACCATACAGGGTCCCTACACCCATGCTCGTCTCTCTCACTCTCCATTCACTTACTCATTCCCTCTCACACCAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCTACTTCATACCAAAACTTCCCTCGCTCCCTAGCCTCTTTCTCAGTCCAAGCAGGCCCCTACACCCTCCTTCAACATTTCAATGCTTCACTCAACGCCGATGTTGATGATGATCCTAGCCACCCTGACATCTTGTTCAAAGAGTATTGCATCAACCTCCAAGATGGTGACCAGCTCAACATAACCTTCCTTCCTAGCACCACAGATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCCCTTATCTCTACTACACCGATCCTGACGACTCCACAGAGCAGCCGCAATTTGTTGGCACCATGACCCCGGATTTCTATTTCGTTGAGAACAAGTTTGCTCTCGAGACCATGTACAGGTTAAAAGCTGGTGAACATACAATCTCCTCCTCTGAGGACACGGGTATGCTCAGGACTTGGGATGCCGATAGCAAGTACCTAGATACTCAAAGTGAAGAATCTATTGAGTTTAAGAGTACAACTAAGCTGAGCTTCACTAAGAAGATTCCTAACTACACGGCACCAGACCAAGTATTCCGATCTGTAAGGAATATGGGAAGGGATGCATCTTTCAACATGAGGAACAACATCACTTGGCAACTTACCGTTGATTCCGGCTTCACCTACTTGCTAAGGTTATACTTTTGTGAGCTTAACCCGAGAGTTCACGAGGCTGGTTTCTTGAGATTCTTCATCTTCATACATGATCAGTTGGCTACCGATTGGGCAGACGTTTTCATGTGGACGAAACAGTGGGGTGTGCCCGTGGTTAAAGAGTATGTAGTTATCATCTCAGAGAATCCGAAAAAAGTTAACCTTTCGCTAAAAATGCATCCTCACCCTAAAAGCATTATCCAGGACGCACAAATAAATGCAATTGAAATCTTCAAAATCAGCAATTATAGAGGTAGTCTTGCTGGACCAAATCAGGACCCTCCTCTACAAACCGCAGTGGTATCCCGTCAAGGGTCAAACAATAAAAACGGAGCCTCCAAGAAAACCCTAGCCGCCGTGACAGGGACAGTTTTCGGTGTCCTTTTCCTCTCTTTTATTGTCGCTTTCTTCTTCGTCAAACGCAAGAAAAACATCTCCGTTGAAAGTAAGAAAGAGGGAAATTCTCGCCGGGATGGGTCATCACCACTACCAACCAACCTCTGTCGTCACTTCTCAATCTCTGAAATCATTGCCGCAACCAATAACTTCGACGAACTCTTCGTCGTTGGAGTGGGAGGCTTTGGCAACGTGTACAAAGGCTACATAGACGATTCAACACCTGTGGCAATCAAAAGGCTCAAACCGGGTTCTCAGCAAGGTCTGAACGAGTTCATGAACGAGATCGAAATGCTCTCTCAACTTCGACATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGATCCTCGTTTACGATTTCATGGATCGTGGAGCCCTCCGTGATCATCTCTACGACACCGATAACCCTTTGCTTTCATGGAAGCAAAGGCTTCAGATATGCATCGGGGCGGCACGAGGACTGCATTATCTGCATACAGGTGCGAAACAGATGATCATTCACCGTGACGTGAAGAGCACAAACATCTTGTTGGATGAAAAATGGGTGGCGAAAGTTTCAGACTTCGGATTGTCTCGAGTTGGGCCCATAGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAGGGCAGTGTTGGGTATTTAGATCCGGAGTATTACAAACGACAGCGTTTGACGGAGAAGTCGGACGTGTACTCGTACGGAGTGGTGCTCTTAGAGGTATTGTGTGGGAGGCAGCCTTTGCTCCGAACGGTGGAGAAGCAACAGGTGTCCCTCGTGGATTGGGCGAAGCATCGGTATGAGAAGGGATCTCTGAGTGAGATTGTGGATCCAGCACTGAAGGGTCAGATAGCACCTCTCTGTTTGCGCAAATTTAGTGAGGTTGCGATGAGCTGTTTACTTGAGGATGGGACTCAGCGACCTTCCATGAACGACGTCGTTGGGGTGTTAGAGTTTGTTCTGCAGCTTCAGCTTCAGGACAGTGCTCATGGTGATGTAGTGTGGGAGAGTGGTGGGGATTATGAAGGCAGTACAACCGAGGACATGTTTAGCAGCTCCCATAGTAATAGCAGTGTATTGAACACTACAAGCTACGGTAATAAGGAATCTGATAGGTTAATCGCTGATAATGTTTTTTCTGAGCTTAAGGATCCAAAGGGACGCTGA 2574 0.4724 MDTSCTRTALRTIFFLLLWCCLSFISMADVIYRPTDLFSISCGSSTNFSTPDTRNWTSDNHFLSPTNLSVAAPSLTPSTIQGPYTHARLSHSPFTYSFPLTPGPKFIRLFFYSTSYQNFPRSLASFSVQAGPYTLLQHFNASLNADVDDDPSHPDILFKEYCINLQDGDQLNITFLPSTTDSYAFINGIEIVSMPPYLYYTDPDDSTEQPQFVGTMTPDFYFVENKFALETMYRLKAGEHTISSSEDTGMLRTWDADSKYLDTQSEESIEFKSTTKLSFTKKIPNYTAPDQVFRSVRNMGRDASFNMRNNITWQLTVDSGFTYLLRLYFCELNPRVHEAGFLRFFIFIHDQLATDWADVFMWTKQWGVPVVKEYVVIISENPKKVNLSLKMHPHPKSIIQDAQINAIEIFKISNYRGSLAGPNQDPPLQTAVVSRQGSNNKNGASKKTLAAVTGTVFGVLFLSFIVAFFFVKRKKNISVESKKEGNSRRDGSSPLPTNLCRHFSISEIIAATNNFDELFVVGVGGFGNVYKGYIDDSTPVAIKRLKPGSQQGLNEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGALRDHLYDTDNPLLSWKQRLQICIGAARGLHYLHTGAKQMIIHRDVKSTNILLDEKWVAKVSDFGLSRVGPIGSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSYGVVLLEVLCGRQPLLRTVEKQQVSLVDWAKHRYEKGSLSEIVDPALKGQIAPLCLRKFSEVAMSCLLEDGTQRPSMNDVVGVLEFVLQLQLQDSAHGDVVWESGGDYEGSTTEDMFSSSHSNSSVLNTTSYGNKESDRLIADNVFSELKDPKGR 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00017 857 FunFam Receptor-like protein kinase FERONIA 591 806 - -
Vium2948g00017 857 FunFam FERONIA receptor-like kinase 37 195 - -
Vium2948g00017 857 Gene3D Phosphorylase Kinase; domain 1 475 590 - -
Vium2948g00017 857 Gene3D - 36 194 - -
Vium2948g00017 857 Gene3D - 227 414 - -
Vium2948g00017 857 MobiDBLite consensus disorder prediction 814 834 - -
Vium2948g00017 857 SUPERFAMILY Protein kinase-like (PK-like) 490 789 IPR011009 -
Vium2948g00017 857 Pfam Malectin-like domain 40 412 IPR024788 -
Vium2948g00017 857 ProSiteProfiles Protein kinase domain profile. 515 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2948g00017 857 Pfam Protein tyrosine and serine/threonine kinase 521 784 IPR001245 GO:0004672|GO:0006468
Vium2948g00017 857 PANTHER OS03G0124300 PROTEIN-RELATED 14 476 IPR046957 GO:0004672
Vium2948g00017 857 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Vium2948g00017 857 FunFam receptor-like protein kinase FERONIA 476 590 - -
Vium2948g00017 857 Gene3D Transferase(Phosphotransferase) domain 1 591 802 - -
Vium2948g00017 857 FunFam FERONIA receptor-like kinase 227 413 - -
Vium2948g00017 857 CDD STKc_IRAK 530 787 - -
Vium2948g00017 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Vium2948g00017 857 SMART serkin_6 515 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00017 Vium-Chr2948 121134 124159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00017 23 857 Receptor kinase-like Gene Family AT3G51550 45.241 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium2948g00017 Malectin_like 6.5e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00017 - - vun:114186088 1239.94