LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2948g00016	ATGGGCACAACTTACACACCAATTGCTTTGGGCACGATCCTATTCTTCCTCCTCTGGTTGTGCCACCCTTATTTTTCCATAGCAGACGTTATCTACCGTCCGGTTGACCATTTCACCGTAAACTGTGGCTCCACTATAAACTTCACTCTCGATGGTCGGAACTGGACTGGAGATAGCAATACGAAATTCCTCTCCGAAAGTAAGGACTCAGTTGCTGTTCCAGCAGACACACAATCAACAATACAGGGCCCTTACACTTATGCTCGTCTCTCTCACTCCCAATTCACCTACTCCTTCCCTGTCACCACACAAGGCCCCTTCTTTCTTCGTCTCTTCTTCTACTCAACTTCATACCAAATGTTTGACCGCCCCAAAGCCAATTTCTCAGTCCAAGCAAGCTCATACACGCTCCTTCAACATTTCAATCCTTCCCTATTTGCTGAAGCTGATGACGACCCAACCCACTCTGACATCTTGTTCAGAGAGTACTGCATCTACCTCCAACATGGTCAGAGGCTCAACATAACCTTCACTCCAAGTACCACAGAGTCGTACGCTTTCATAAATGGAGTCGAGATTGTTTCGATGCCCTCTTATTTATACTACTCCAACCCTAATTACACTGTTTCTGACGACTTCACTGGATTGCCACAACTTGTTGGTCACATGACTAAAGAATATTTCATTACAAATAAGTCTGCTCTAGAGACAAAGTACCGGTTGAACGTTGGAGGACCACAAATCTCACCGTCAGAAGACACTGGCATGTTCAGGATCTGGGATTCGGATGAGAAATACATATCTACTGATAGTGGACAATCAGTTGATTTTAAGCAAAAAGCTAATCTCAGCTTCAATAAGACTCCTAACTACACGGCACCGGACCAAGTATATCGCACCGTAAGGAATATTGGATCGAATCCATTTAAGAACCTCACATGGCACCTTCCTGTTTATTCTGGCTTCTTCTACTTGCTAAGGTTACACTTTTGTCAGCTTAACCCGTATTTTAAAGAGCGCGGTGATCAAATATTCTACATCTTCATTCAGGATCAGTTGTCTGAAACAGGGGCAGACATTCTCAAGTGGAGCGACAAGATGGGTGTACCAGTGGTTAAAGACTACGCAGTTTACATTCCGGGAAATAAGGAAAAGGCATATCTTTCACTGGAAATGCATCCAAATAACATATCCGTATATCAGGATGCACAACTGAATGCAATTGAAGTCTTCAAAATCAACGACACAACAGGTAGTCTCGCTGAATCGAACCCAGACCCTCTTCCACAAACCCCCAATAAGAAAATCTCAAAGAAGAAAAATAGCGGCACCAGAAGACCCCTAATTGCCGCGGTCGCAGGTGCAGTTTCCGGTGTCGTTTTACTCTCCATTATAGTGGCTTTCTTCATCAACAAACGCAAGCAGAACGTTTCCGTTTACAAATACCAGAAAGATGGAACTTCTCGCGGGGGTGGTTCATCATCGCTACCAACCAACCTCTGCCGTCACTTCTCAATCGCAGAAATCAGGACCGCCACAAACAACTTCGATAAACTCTTTGTCGTTGGAGTGGGAGGCTTTGGCGACGTGTACAAAGGCTATATCGATGACGGCCAAACACCTGTCGCTATCAAAAGGCTCAAACCGGGTTCTGAGCAAGGTCTGAACGAGTTCATGAATGAGATCCAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGTTACGAGAGCAACGAGATGATCCTCGTTTACGATTTCATGGATCGTGGAACCCTCCGTGATCATCTCTACGGATCCGATAAGCCTCCGCTTTCATGGAATCAAAGGCTTCGGATATGCATAGGGGCCGCGCGAGGACTGCATTATCTGCATACAGGTGCAAAACAGATGATCATTCACCGTGACGTGAAGAGCACAAACATCTTGTTGGATGAAAAATGGGTGGCGAAGGTTTCAGACTTCGGGTTATCTCGAATTGGGCCCACGGGTTCTTCAATGACCCATGTGAGCACAAAGGTGAAAGGCAGTGTTGGGTATTTGGACCCGGAGTATTACAAACGACAGCGTTTGACGGAGAAGTCGGACGTGTACTCGTATGGGGTGGTGCTCTTGGAGGTATTGTGCGGGAGGCAGCCTTTGCTCCGAACGGCGGAGAAGCAACAGGTGTCACTTGTGGATTGGGCGAAGCATCGGTATGAGAAGGGGTTTCTGAGTGAGATTGTGGATCCAGCACTGAAGGGCCAGATAGCACCTCACTGTTTGCGCAAATTTGGTGAGGTTGCGTTGAGCTGTTTGCTTGAGGATGGGAATCAGCGACCTTCCATGAACGTCGTGGTTGGAGTGTTGGAGTTTGTTATGCAACTTCAGCTTCAGGACGGTGCGAATGTCAATGTCGTGTTGGAAAGTGGTGGGGATTATGAAGACAGTACTACTGAGGACATGTTTAGCGGTAGCCATAGTAGTATGCATGTTTCGAACTTCAGTAATAGCAGTGGATTGAACTCTACAAGCTACGCGAGTCAGGAATCTGACAGGTTGATCTCAGAGCTTGTTTTCTCTGAGATTAATGATCCAAAGGGACGCTAA	2604	0.4624	MGTTYTPIALGTILFFLLWLCHPYFSIADVIYRPVDHFTVNCGSTINFTLDGRNWTGDSNTKFLSESKDSVAVPADTQSTIQGPYTYARLSHSQFTYSFPVTTQGPFFLRLFFYSTSYQMFDRPKANFSVQASSYTLLQHFNPSLFAEADDDPTHSDILFREYCIYLQHGQRLNITFTPSTTESYAFINGVEIVSMPSYLYYSNPNYTVSDDFTGLPQLVGHMTKEYFITNKSALETKYRLNVGGPQISPSEDTGMFRIWDSDEKYISTDSGQSVDFKQKANLSFNKTPNYTAPDQVYRTVRNIGSNPFKNLTWHLPVYSGFFYLLRLHFCQLNPYFKERGDQIFYIFIQDQLSETGADILKWSDKMGVPVVKDYAVYIPGNKEKAYLSLEMHPNNISVYQDAQLNAIEVFKINDTTGSLAESNPDPLPQTPNKKISKKKNSGTRRPLIAAVAGAVSGVVLLSIIVAFFINKRKQNVSVYKYQKDGTSRGGGSSSLPTNLCRHFSIAEIRTATNNFDKLFVVGVGGFGDVYKGYIDDGQTPVAIKRLKPGSEQGLNEFMNEIQMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGTLRDHLYGSDKPPLSWNQRLRICIGAARGLHYLHTGAKQMIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGSSMTHVSTKVKGSVGYLDPEYYKRQRLTEKSDVYSYGVVLLEVLCGRQPLLRTAEKQQVSLVDWAKHRYEKGFLSEIVDPALKGQIAPHCLRKFGEVALSCLLEDGNQRPSMNVVVGVLEFVMQLQLQDGANVNVVLESGGDYEDSTTEDMFSGSHSSMHVSNFSNSSGLNSTSYASQESDRLISELVFSEINDPKGR	867

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2948g00016	867	FunFam	receptor-like protein kinase FERONIA	479	592	-	-
	Vium2948g00016	867	CDD	STKc_IRAK	531	789	-	-
	Vium2948g00016	867	MobiDBLite	consensus disorder prediction	421	437	-	-
	Vium2948g00016	867	Gene3D	-	37	197	-	-
	Vium2948g00016	867	Gene3D	-	234	415	-	-
	Vium2948g00016	867	FunFam	Receptor-like protein kinase FERONIA	593	808	-	-
	Vium2948g00016	867	Pfam	Malectin-like domain	40	413	IPR024788	-
	Vium2948g00016	867	FunFam	FERONIA receptor-like kinase	233	414	-	-
	Vium2948g00016	867	Pfam	Protein tyrosine and serine/threonine kinase	522	785	IPR001245	GO:0004672\|GO:0006468
	Vium2948g00016	867	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	637	649	IPR008271	GO:0004672\|GO:0006468
	Vium2948g00016	867	MobiDBLite	consensus disorder prediction	421	441	-	-
	Vium2948g00016	867	PANTHER	OS03G0124300 PROTEIN-RELATED	13	476	IPR046957	GO:0004672
	Vium2948g00016	867	Gene3D	Transferase(Phosphotransferase) domain 1	593	806	-	-
	Vium2948g00016	867	ProSiteProfiles	Protein kinase domain profile.	516	791	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2948g00016	867	SMART	serkin_6	516	791	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2948g00016	867	SUPERFAMILY	Protein kinase-like (PK-like)	493	791	IPR011009	-
	Vium2948g00016	867	Gene3D	Phosphorylase Kinase; domain 1	501	592	-	-
	Vium2948g00016	867	ProSitePatterns	Protein kinases ATP-binding region signature.	522	545	IPR017441	GO:0005524
	Vium2948g00016	867	FunFam	FERONIA receptor-like kinase	37	197	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2948g00016	Vium-Chr2948	105529	108285	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2948g00016	27	867	Receptor kinase-like Gene Family	AT3G51550	46.444	0.0	681

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vium2948g00016		Malectin_like	1.3e-36	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2948g00016	-		-	vun:114186088	1172.92