Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00015 ATGGAGCAATTTGTGAACCTGACCATCACAGATAAAACCGATGTTTATTCATTTGGTATGGTTCTATTCGAAGTTGTGAGTGGAAAGAAATATATGAGTTTGATTACAGAAGAGGAATTTCCGATTGAAGAGAAAGTTGATCCGAAAATCAAAGGAAAGATTGCACCTGAGTCTTGGCAAGTCTTCATAGATATCATGCAAGAATGCTTGAAATACGAAGTAGATGAGCGACCAACAATGGGTGAGGTAGAGTATACGACAATAATAGAAGAGCTGTGCCATCGGTTCTCTCTCGCCGATATTAGGAAATCAACCGACAACTTTGATCATAAGAGGCTAATTGGGTATGGAGGATTTGATATCGGAGTATATAAAGGTTGTCTTCAGCATGATGGTTCTGATTATACAGTCACTATAAAGCGATTTAAGGCGGATGGACCTCAAAGATGGAACCTGTTCAAGAATGAAATAGAATTGCTCTGCCAGCTTCGTGACCCTAATTGTATCACACTTATTGGATTTTGCAGCCACAAGAAAGAGAAGATTCTGGTGTACGAATACATGTCCAATGGATCTCTGCATCGGCACCTACAACATGGGGATCTGTCATGGAAAAAGAGACTAGAGATTTGCATAGGAGCGGCTCGTGGATTACACTACCTTCATTCTGGAGCCAAGCGCACCATCATTCACTGTGACTTCAGTTCTAAAAGTATTCTTTTAAATGATGACATGGAGCCAAAACTCGCAGATTTCAGCTTTTGCCGACAAGGAGCACCTTCTCTGTCAAAGCCAAAACCAATTAAAGTAGATTGTGTTACGAGTACTTCATGTTTCATCGCTCAGGAGTATTCCCGGGACGGTACAATCACGGACAAATGTGATGTTTACTCGTTTGGTTGGGTTCTAAAAGAAGTTGTGTTTGGAACGGGATACCTTATAGAAGAAGTGCCTGGTAGGCCGGTTGAGGATATAATTGATAAAAATATCAAAAGGAATATTGCACCTGAGTGTTGGAGAGTTATTGTAGATATCATACAAAGATGTGTGCAGTATAATCCTCATGAGAGACCAACAATGGGTGAAGTGGAGCTGGAACTTGAGCATGCTCTGTCATTGCAAGAACGAGCAGATATTGCAAACACCAATGGTGACTATACTTTGTTCTCCAAAACCATTATTAAGACTTGTAATGGGGAAGAAGACAGTGTTTAA 1215 0.4049 MEQFVNLTITDKTDVYSFGMVLFEVVSGKKYMSLITEEEFPIEEKVDPKIKGKIAPESWQVFIDIMQECLKYEVDERPTMGEVEYTTIIEELCHRFSLADIRKSTDNFDHKRLIGYGGFDIGVYKGCLQHDGSDYTVTIKRFKADGPQRWNLFKNEIELLCQLRDPNCITLIGFCSHKKEKILVYEYMSNGSLHRHLQHGDLSWKKRLEICIGAARGLHYLHSGAKRTIIHCDFSSKSILLNDDMEPKLADFSFCRQGAPSLSKPKPIKVDCVTSTSCFIAQEYSRDGTITDKCDVYSFGWVLKEVVFGTGYLIEEVPGRPVEDIIDKNIKRNIAPECWRVIVDIIQRCVQYNPHERPTMGEVELELEHALSLQERADIANTNGDYTLFSKTIIKTCNGEEDSV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00015 404 FunFam Receptor-like protein kinase ANXUR2 188 389 - -
Vium2948g00015 404 PANTHER OS07G0166700 PROTEIN 8 83 IPR045272 GO:0004714|GO:0006468
Vium2948g00015 404 Gene3D Transferase(Phosphotransferase) domain 1 1 88 - -
Vium2948g00015 404 Gene3D Transferase(Phosphotransferase) domain 1 188 392 - -
Vium2948g00015 404 FunFam Receptor-like protein kinase ANXUR2 77 187 - -
Vium2948g00015 404 ProSiteProfiles Protein kinase domain profile. 108 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2948g00015 404 Gene3D Phosphorylase Kinase; domain 1 89 187 - -
Vium2948g00015 404 Pfam Protein tyrosine and serine/threonine kinase 2 83 IPR001245 GO:0004672|GO:0006468
Vium2948g00015 404 Pfam Protein tyrosine and serine/threonine kinase 111 364 IPR001245 GO:0004672|GO:0006468
Vium2948g00015 404 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2948g00015 404 SUPERFAMILY Protein kinase-like (PK-like) 2 85 IPR011009 -
Vium2948g00015 404 SUPERFAMILY Protein kinase-like (PK-like) 89 366 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00015 Vium-Chr2948 94894 97914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00015 86 402 Receptor kinase-like Gene Family AT5G38990 39.118 2.14e-61 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium2948g00015 PK_Tyr_Ser-Thr 4.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00015 - - gmx:100812131 399.053