Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00014 ATGTTTCTCAAATGTGTGGGGTTCAACCGTTCCAAGCACACAAGTTCATCTCAGAGAAAGTATCCAACGATAATAGAAGAGCTGTGCTGTCAATTTTCTCTCGCCGATCTTAGAAAATCAACCAACAATTTCGACTATAGACACAAAATAGACTCTCGTGGTCGAGTATACAAAGGTATTCTTGAACATAATGGTGTCACTGATTATGCTGTTGCATTAAGGCGGATATTTGAGATAGAAAACCCTGGAATCATTCACTTCAAGAACGAAATTGAGTTGTTGTGTCAGCTTCATCATCCTAATTTGATCCCTCTTATAGGATTCTACGAGGGAAAAAATGAGAGGATTCTTGTATATGAGTACATGGTTAATGGATCTCTAGATCGACAACTGGAAAGAGGGGAACTTTCGTGGAAGAAAAGACTAGAGATTTGCATAGGAGCAGCACGTGGACTACACTACCTTCACGCTGGAGCCAAGCGCACCATCATTCATCGCAACATCAAACCTAGCAAAATTCTTTTGGATGCAAACATGGAGCCAAAGATTTCAGATTTTGGCCTTAGCGTACAGGGACAGCGTTTTATGTCAAAGCCAAAGCCAATTAAAGTAGATTATGTTGCGGGTACTTATGGCTACGTGGCTGCGGAGCAATTTAAGAACCTGACCATCACAGATAAAACCGATGTTTATTCATTTGGTATGGTTCTATTCGAAGTTGTGAGTGGAAAGACATATATGAGTTTAATAGAAGAAGAGGAAAAGTTTGAAATGCCGGTTGAAGAGAAAGTTGATCCGAAAATCAAAGGAAAGATTACACCTGAGTCTTGGCAAGTCTTTATAGATATCGTGCAAGGATGCTTGAAATACGAAGCAGATGAGCGACCAACAATGGGTGAGGTAGAGGTGCAACTTGAGCATGCTCTGTTGTTGCAGGAACAAGCAGATATCACAAACATCCATGGTGATTATGTTTTATTGTCTAAAACCATTATTTATCTAAAGGCTGAGTTAGAAGATGAAGATATCGGTATAACAGAGGACAGTGACTAA 1053 0.3989 MFLKCVGFNRSKHTSSSQRKYPTIIEELCCQFSLADLRKSTNNFDYRHKIDSRGRVYKGILEHNGVTDYAVALRRIFEIENPGIIHFKNEIELLCQLHHPNLIPLIGFYEGKNERILVYEYMVNGSLDRQLERGELSWKKRLEICIGAARGLHYLHAGAKRTIIHRNIKPSKILLDANMEPKISDFGLSVQGQRFMSKPKPIKVDYVAGTYGYVAAEQFKNLTITDKTDVYSFGMVLFEVVSGKTYMSLIEEEEKFEMPVEEKVDPKIKGKITPESWQVFIDIVQGCLKYEADERPTMGEVEVQLEHALLLQEQADITNIHGDYVLLSKTIIYLKAELEDEDIGITEDSD 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00014 350 Pfam Protein tyrosine and serine/threonine kinase 53 304 IPR001245 GO:0004672|GO:0006468
Vium2948g00014 350 SUPERFAMILY Protein kinase-like (PK-like) 21 305 IPR011009 -
Vium2948g00014 350 PANTHER OS07G0166700 PROTEIN 29 312 IPR045272 GO:0004714|GO:0006468
Vium2948g00014 350 Gene3D Phosphorylase Kinase; domain 1 5 121 - -
Vium2948g00014 350 FunFam Receptor-like protein kinase ANXUR2 122 327 - -
Vium2948g00014 350 FunFam Receptor-like protein kinase ANXUR2 10 121 - -
Vium2948g00014 350 ProSiteProfiles Protein kinase domain profile. 42 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2948g00014 350 Gene3D Transferase(Phosphotransferase) domain 1 122 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00014 Vium-Chr2948 88081 90906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00014 11 316 Receptor kinase-like Gene Family AT3G51550 39.441 9.03e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium2948g00014 PK_Tyr_Ser-Thr 4.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00014 - - vum:124832507 687.567