Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00012 ATGTTTCTCAAATGTGTGGGGTTCAACCGTTCCAAGCACACAAGTTCATCTCAGAGAAAGTATCCAACGATAATAGAAGAGCTGTGCTGTCAATTTTCTCTCGCCGATCTTAGAAAATCAACCAACAATTTCGACTATAGACACAAAATAGACTCTCGTGGTCGAGTATACAAAGGTATTCTTGAACATAATGGTGTCACTGATTATGCTGTTGCATTAAGGCGGATATTTGAGATAGAAAACCCTGGAATCATTCACTTCAAGAACGAAATTGAGTTGTTGTGTCAGCTTCATCATCCTAATTTGATCCCTCTTATAGGATTCTACGAGGGAAAAAATGAGAGGATTCTTGTATATGAGTACATGGTTAATGGATCTCTAGATCGACAACTGGAAAGAGGGGAACTTTCGTGGAAGAAAAGACTAGAGATTTGCATAGGAGCAGCACGTGGACTACACTACCTTCACGCTGGAGCCAAGCGCACCATCATTCATCGCAACATCAAACCTAGCAAAATTCTTTTGGATGCAAACATGGAGCCAAAGATTTCAGATTTTGGCCTTAGCGTACAGGGACAGCGTTTTATGTCAAAGCCAAAGCCAATTAAAGTAGATTATGTTGCGGGTACTTATGGCTACGTGGCTGCGGAGCAATTTAAGAACCTGACCATCACAGATAAAACCGATGTTTATTCATTTGGTATGGTTCTATTCGAAGTTGTGAGTGGAAAGACATATATGAGTTTAATAGAAGAAGAGGAAAAGTTTGAAATGCCGGTTGAAGAGAAAGTTGATCCGAAAATCAAAGGAAAGATTACACCTGAGTCTTGGCAAGTCTTTATAGATATCGTGCAAGGATGCTTGAAATACGAAGCAGATGAGCGACCAACAATGGGTGAGGTAGAGGTGCAACTTGAGCATGCTCTGTTGTTGCAGGAACAAGCAGATATCACAAACATCCATGGTGATTATGTTTTATTGTCTAAAACCATTATTTATCTAAAGGCTGAGTTAGAAGATGAAGATATCGGTATAACAGAGGACAGTGACTTGAGCTCTCTTTGTCGCTCTGATTACAGATTATCGATGGACCCAACTTGCACACGAACTGCTTTTAGAACCATTCTCTTCCTCTACCTTATGTGGTGCCTCTCTTTCCTTTCCACAGCAGACGATATTTATCGTCCCACTGACTTCTTTAGCATCAGTTGTGGCTCATCGACCAACTTCTCCACTCCCGACACTCGGAATTGGACTTCAGACAATCACTTCCTCTCTCCAACAAACCCCTCAGTCGCTGCTCCTTCACTCACACCATCTACCATACAGGGTCCCTACACCCATGCTCGTCTCTCTTACTCCTCATTCAATTACTCCTTCCCTGTCACACCAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCTACTTCATACCATAACTTCCCTCGCTTCCAAGCCTCTTTCTCAGTCAGAGCAGGCCCCTACACCCTCCTTCAAGATTTCAATGCTTCCCTCAACGCCGATGCAGATGATGACCCTAGCCACTCTGACATCTTGTTCAGAGAGTATTGCGTTTACTTTGGAGACGGTGAGAACCTGACTATAACCTTCTTTCCCAGTACTACTGATTCATACGCTTTCATCAACGGGATCGAGATTGTTTCCATGCCCCCTTATCTCTACTACACCGATCCTCACTCCACAGAGCAGCCGCAATATGTTGCCAAAATGACTCCATATGTCACTGAGCACAAATTTGCTCTCGAGACCATGTTCAGGTTAGTCGTTTCCGCTGAAATTGCTTCCTCACGGGACACGGGTATGCTCAGAACGTGGAAACCTGACATCAAGTACGTAACTACTCAATATTATCAACCAGTTAACTATGAGAAAATTAAAAGGCTGACGTTCATTACAACCTATAACTACACGGCACCAGACCAAGTGTACAGAACCGTTCGGAGTATGGGACTTAATGCCTCTATCAACATGGGTTTCAATCTCACATGGCAGCTTCCTGTTGATTCTGGCTTCACCTACATGATACGGTTACACTTTTGCCAGCTTGATCCTAGGGTTAACAACACTGGTGACTTGATTTTCAAAATCATCATAGCGGATCAGTTGGCAACCAACTGGACAGACGTTCTCATGTGGACTGATAATCAGAGGGGTGTACCGGTGGTTAAAGACTACGTAGTTTCCATCTTAGCCCCAGATAATCAGAAAAAGGCATATCTTTCTGTGAAATTACACCCTCACGATAAAAGCTTGATCAAAGACGCACAACTAAACGCAATTGAACTCTTCAAAATAAGCGACCCAACAGGTAATCTCGCTGGGCCGAACCCAGACCTGCCTCCATTATCAAAAACTAAAAAGAGCAGAACCCCTGCCGCCGTTGCAGGGGCAGTTTCGGGTGTCCTTTTGTTCTCCTTTATTGTCGCCTTTTTCCTCATCAAACGCCGGAAGAATGTCGTTGACAACAAGGGTCCCAATAAAAAGGAAGGAACTTCTCGGAGCAGCGGCTCATTACTGATACCGACCGCCCTCTGCCGACAGTTCTCAATGGCCGAAATGAAAGTCGCAACCAACAACTTCGACAAAGTCTTCGAGGTTGGCGTCGGAGGCTTCGGTAACGTGTACAAAGGTCACATCGACAAAGGCTCAACTACTGTCGCAGTCAAAAGGCTTAAACCGGGTTCTCGCCAAGGTATTCGCGAGTTCAAGAATGAGATCCAAATGCTGTCTCAACTTTGTCACCCCAATATCGTTTCCCTCATTGGTTACTGCTACGAGAACAACGAGATGATCCTCGTTTACGATTTCATGAATCACGGCAACCTCAGTGACCATCTCTACGACACTGATAACCCGTCTTTGTCGTGGAAACGTAGGCTCCAGATATGCATAGGTGTTGCACGAGGATTGCATTATCTGCATACAGGTGTGGAGCAGGTGATCATTCACCGTGACGTGAAGAGCAGCAATATCTTGTTGGATGAAAAATGGGTGGCGAAGGTTTCAGATTTCGGATTATCCCGAATTGGGGGGCCCAGTGGTTCTTCGATGAGTCTCGTGAGCGTGAACACTGAGGTGAAAGGTAGTATTGGATATTTGGACCCAGAATATTACAAGCGATACCTTTTGACGGAGAAGTCTGACGTGTACTCACTTGGAGTGATGTTGTTGGAGGTGTTATCTGGGAGGAAGCCTTTGCTCCCTGGGGAGGAAAAGCAACGAATTTCACTTGTTAATTGGGCGAAACATTGCTATGAGAAGGGAACTCCGAATGAGATTGTGGATACAGAACTCAAGGACCAGGTAGCACCTCAGTCTCTGCTCAAATTTATTGAGGTTGCATTCACCTGTTTGCTTGAAGACGGGACTCAACGACCTTCCATGAACGATGTCGTTGAGCTGTTGGAGTTTGCTCTTCAGCTTCAGGATGGTGTTGTTAATGGTGCGTTGCAGAGTTCTCTTAATTATGAAGATTGTAACACCCCCAAAAACAGCATTATTTAG 3525 0.4451 MFLKCVGFNRSKHTSSSQRKYPTIIEELCCQFSLADLRKSTNNFDYRHKIDSRGRVYKGILEHNGVTDYAVALRRIFEIENPGIIHFKNEIELLCQLHHPNLIPLIGFYEGKNERILVYEYMVNGSLDRQLERGELSWKKRLEICIGAARGLHYLHAGAKRTIIHRNIKPSKILLDANMEPKISDFGLSVQGQRFMSKPKPIKVDYVAGTYGYVAAEQFKNLTITDKTDVYSFGMVLFEVVSGKTYMSLIEEEEKFEMPVEEKVDPKIKGKITPESWQVFIDIVQGCLKYEADERPTMGEVEVQLEHALLLQEQADITNIHGDYVLLSKTIIYLKAELEDEDIGITEDSDLSSLCRSDYRLSMDPTCTRTAFRTILFLYLMWCLSFLSTADDIYRPTDFFSISCGSSTNFSTPDTRNWTSDNHFLSPTNPSVAAPSLTPSTIQGPYTHARLSYSSFNYSFPVTPGPKFIRLFFYSTSYHNFPRFQASFSVRAGPYTLLQDFNASLNADADDDPSHSDILFREYCVYFGDGENLTITFFPSTTDSYAFINGIEIVSMPPYLYYTDPHSTEQPQYVAKMTPYVTEHKFALETMFRLVVSAEIASSRDTGMLRTWKPDIKYVTTQYYQPVNYEKIKRLTFITTYNYTAPDQVYRTVRSMGLNASINMGFNLTWQLPVDSGFTYMIRLHFCQLDPRVNNTGDLIFKIIIADQLATNWTDVLMWTDNQRGVPVVKDYVVSILAPDNQKKAYLSVKLHPHDKSLIKDAQLNAIELFKISDPTGNLAGPNPDLPPLSKTKKSRTPAAVAGAVSGVLLFSFIVAFFLIKRRKNVVDNKGPNKKEGTSRSSGSLLIPTALCRQFSMAEMKVATNNFDKVFEVGVGGFGNVYKGHIDKGSTTVAVKRLKPGSRQGIREFKNEIQMLSQLCHPNIVSLIGYCYENNEMILVYDFMNHGNLSDHLYDTDNPSLSWKRRLQICIGVARGLHYLHTGVEQVIIHRDVKSSNILLDEKWVAKVSDFGLSRIGGPSGSSMSLVSVNTEVKGSIGYLDPEYYKRYLLTEKSDVYSLGVMLLEVLSGRKPLLPGEEKQRISLVNWAKHCYEKGTPNEIVDTELKDQVAPQSLLKFIEVAFTCLLEDGTQRPSMNDVVELLEFALQLQDGVVNGALQSSLNYEDCNTPKNSII 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00012 1174 FunFam FERONIA receptor-like kinase 586 773 - -
Vium2948g00012 1174 ProSitePatterns Protein kinases ATP-binding region signature. 873 896 IPR017441 GO:0005524
Vium2948g00012 1174 ProSiteProfiles Protein kinase domain profile. 867 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2948g00012 1174 Gene3D - 589 773 - -
Vium2948g00012 1174 Gene3D - 399 556 - -
Vium2948g00012 1174 SUPERFAMILY Protein kinase-like (PK-like) 842 1145 IPR011009 -
Vium2948g00012 1174 FunFam FERONIA receptor-like kinase 399 557 - -
Vium2948g00012 1174 Gene3D Phosphorylase Kinase; domain 1 852 943 - -
Vium2948g00012 1174 FunFam Receptor-like protein kinase ANXUR2 122 327 - -
Vium2948g00012 1174 PANTHER OS07G0166700 PROTEIN 851 1149 IPR045272 GO:0004714|GO:0006468
Vium2948g00012 1174 FunFam Receptor-like protein kinase FERONIA 944 1162 - -
Vium2948g00012 1174 ProSiteProfiles Protein kinase domain profile. 42 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2948g00012 1174 FunFam receptor-like protein kinase FERONIA 829 943 - -
Vium2948g00012 1174 Gene3D Phosphorylase Kinase; domain 1 5 121 - -
Vium2948g00012 1174 Gene3D Transferase(Phosphotransferase) domain 1 944 1155 - -
Vium2948g00012 1174 Gene3D Transferase(Phosphotransferase) domain 1 122 324 - -
Vium2948g00012 1174 CDD STKc_IRAK 873 1143 - -
Vium2948g00012 1174 Pfam Malectin-like domain 402 772 IPR024788 -
Vium2948g00012 1174 Pfam Protein tyrosine and serine/threonine kinase 872 1142 IPR001245 GO:0004672|GO:0006468
Vium2948g00012 1174 Pfam Protein tyrosine and serine/threonine kinase 53 304 IPR001245 GO:0004672|GO:0006468
Vium2948g00012 1174 ProSitePatterns Serine/Threonine protein kinases active-site signature. 988 1000 IPR008271 GO:0004672|GO:0006468
Vium2948g00012 1174 FunFam Receptor-like protein kinase ANXUR2 10 121 - -
Vium2948g00012 1174 SUPERFAMILY Protein kinase-like (PK-like) 21 305 IPR011009 -
Vium2948g00012 1174 SMART serkin_6 867 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2948g00012 1174 SMART serkin_6 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00012 Vium-Chr2948 77045 84868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00012 11 316 Receptor kinase-like Gene Family AT3G51550 39.441 2.09e-61 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium2948g00012 Malectin_like 8.4e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00012 - - vum:124832507 2342